miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 34577 0.67 0.779535
Target:  5'- cGACGCaGACCGUGcGCuccgcgacgCCGUUCCugGCg -3'
miRNA:   3'- -CUGCGaCUGGCGC-CGua-------GGCAGGG--CG- -5'
15839 3' -60.5 NC_004065.1 + 36542 0.68 0.716199
Target:  5'- -uCGCUaa-CG-GGCAUCCGUCCgGCg -3'
miRNA:   3'- cuGCGAcugGCgCCGUAGGCAGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 38157 0.73 0.420876
Target:  5'- uGACGCUGGaagaCGCGGCgAUCCGcgCCaGCg -3'
miRNA:   3'- -CUGCGACUg---GCGCCG-UAGGCa-GGgCG- -5'
15839 3' -60.5 NC_004065.1 + 40153 0.66 0.821442
Target:  5'- aGACGCUG-CCGaCGGCAgcaaaCCc-CUCGCg -3'
miRNA:   3'- -CUGCGACuGGC-GCCGUa----GGcaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 41448 0.73 0.463347
Target:  5'- -gUGCUGGCCGUGGaGagCGUCCUGCu -3'
miRNA:   3'- cuGCGACUGGCGCCgUagGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 45539 0.66 0.837192
Target:  5'- cGGCGCcgcGGCgGCGGCGgcagCCG-CCCa- -3'
miRNA:   3'- -CUGCGa--CUGgCGCCGUa---GGCaGGGcg -5'
15839 3' -60.5 NC_004065.1 + 47289 0.66 0.837192
Target:  5'- cGACGUgucggUGGCCcCGGCGUCg--CCCGUg -3'
miRNA:   3'- -CUGCG-----ACUGGcGCCGUAGgcaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 48766 0.66 0.816596
Target:  5'- uGGCGCcGAagagcaucacgaaccUCGUGGUGUCCagGUCCCGUc -3'
miRNA:   3'- -CUGCGaCU---------------GGCGCCGUAGG--CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 52315 0.67 0.750228
Target:  5'- -uCGCUGuccccuccacaacuAcaacCCGCGGCA-CCGUCCgCGCa -3'
miRNA:   3'- cuGCGAC--------------U----GGCGCCGUaGGCAGG-GCG- -5'
15839 3' -60.5 NC_004065.1 + 56639 0.68 0.706837
Target:  5'- gGugGCagcGGCCGCGGCAcCCuUCaCCGUc -3'
miRNA:   3'- -CugCGa--CUGGCGCCGUaGGcAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 58618 0.67 0.779535
Target:  5'- cGACGCg---CGCGGCGgagucgCCGgUCUCGCg -3'
miRNA:   3'- -CUGCGacugGCGCCGUa-----GGC-AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 58932 0.67 0.752938
Target:  5'- --aGCUGACCGUGGUAUUC-UCCUuCa -3'
miRNA:   3'- cugCGACUGGCGCCGUAGGcAGGGcG- -5'
15839 3' -60.5 NC_004065.1 + 59708 0.67 0.796697
Target:  5'- gGGCGCcgagcGGCCGCGGCGcacggcgaCCGUCgCGg -3'
miRNA:   3'- -CUGCGa----CUGGCGCCGUa-------GGCAGgGCg -5'
15839 3' -60.5 NC_004065.1 + 60770 0.7 0.630555
Target:  5'- -cCGCacagGGCCGCGGCcucCCGcCUCGCg -3'
miRNA:   3'- cuGCGa---CUGGCGCCGua-GGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 60910 0.74 0.373146
Target:  5'- -cUGCUGGCCGCGGCccgcGUCUGUCaggaCGUg -3'
miRNA:   3'- cuGCGACUGGCGCCG----UAGGCAGg---GCG- -5'
15839 3' -60.5 NC_004065.1 + 61383 0.69 0.687954
Target:  5'- cGACGgUcGCCGCgccGGC-UCCG-CCCGCg -3'
miRNA:   3'- -CUGCgAcUGGCG---CCGuAGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 64007 0.68 0.725498
Target:  5'- aGACGgUGACgGCcucccGCGUCCGucguuUCCUGCa -3'
miRNA:   3'- -CUGCgACUGgCGc----CGUAGGC-----AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 65897 0.66 0.837192
Target:  5'- -cUGCUGauGCCGCGGCGcCUGgaacuguaCCGCa -3'
miRNA:   3'- cuGCGAC--UGGCGCCGUaGGCag------GGCG- -5'
15839 3' -60.5 NC_004065.1 + 66129 0.66 0.821442
Target:  5'- aGGCGCUGGCgCGCugGGCcgCgGaCCgGCg -3'
miRNA:   3'- -CUGCGACUG-GCG--CCGuaGgCaGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 66383 0.66 0.844824
Target:  5'- -cCGCUG-CCGCuGCcgCCGcCgCCGCc -3'
miRNA:   3'- cuGCGACuGGCGcCGuaGGCaG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.