miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 67585 0.71 0.558048
Target:  5'- aGCGCaggGGCCucggcucgagauagcGCGGCGUCCGUCgcaCCGUa -3'
miRNA:   3'- cUGCGa--CUGG---------------CGCCGUAGGCAG---GGCG- -5'
15839 3' -60.5 NC_004065.1 + 68155 0.69 0.660299
Target:  5'- gGACGCggUGAUCGCGGCGgcgcgcgcgacggagCUGUcggcCCCGCc -3'
miRNA:   3'- -CUGCG--ACUGGCGCCGUa--------------GGCA----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 72026 0.72 0.472109
Target:  5'- cGACGCUGAUgGCGGCG-CUGcaCCCGg -3'
miRNA:   3'- -CUGCGACUGgCGCCGUaGGCa-GGGCg -5'
15839 3' -60.5 NC_004065.1 + 74655 0.66 0.821442
Target:  5'- uGAgGUccgGACCGCGGCGcgUCCG-CCguaGCg -3'
miRNA:   3'- -CUgCGa--CUGGCGCCGU--AGGCaGGg--CG- -5'
15839 3' -60.5 NC_004065.1 + 75322 0.76 0.322291
Target:  5'- gGACGCaGuagaCGCGGCGUCCGUCgCGUu -3'
miRNA:   3'- -CUGCGaCug--GCGCCGUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 77230 0.75 0.343434
Target:  5'- cACGCUGAUCGUGGCcaCCGaguUCCUGCa -3'
miRNA:   3'- cUGCGACUGGCGCCGuaGGC---AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 77978 0.87 0.057655
Target:  5'- aGACGCUGGCCGCGGCGagCCGcCCCGg -3'
miRNA:   3'- -CUGCGACUGGCGCCGUa-GGCaGGGCg -5'
15839 3' -60.5 NC_004065.1 + 79988 0.68 0.743874
Target:  5'- -uCGCcGACCGCgGGCAguuccuccuUCCGagCCGCc -3'
miRNA:   3'- cuGCGaCUGGCG-CCGU---------AGGCagGGCG- -5'
15839 3' -60.5 NC_004065.1 + 80322 0.73 0.45467
Target:  5'- cGGCGC-GGCCGCGGCcccccggcGUUCGaCCUGCa -3'
miRNA:   3'- -CUGCGaCUGGCGCCG--------UAGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 82284 0.66 0.829396
Target:  5'- -gUGUUGGCCGUGGUcUCCcugagggCCCGUa -3'
miRNA:   3'- cuGCGACUGGCGCCGuAGGca-----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 82407 0.68 0.743874
Target:  5'- -gUGCUguuguugacGACCGCGGUguugGUCUGgUCCUGCg -3'
miRNA:   3'- cuGCGA---------CUGGCGCCG----UAGGC-AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 86891 0.72 0.507956
Target:  5'- cGACGCaGGUCGCGGCGcCgGUCUCGCc -3'
miRNA:   3'- -CUGCGaCUGGCGCCGUaGgCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 88027 0.66 0.837192
Target:  5'- cGACGauccGCCGCGGUAUCguCGUCaUCGCc -3'
miRNA:   3'- -CUGCgac-UGGCGCCGUAG--GCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 88374 0.72 0.507956
Target:  5'- -cCGC-GGCCGCGGCAccgccaccgcccUCCGUCgCCGa -3'
miRNA:   3'- cuGCGaCUGGCGCCGU------------AGGCAG-GGCg -5'
15839 3' -60.5 NC_004065.1 + 88932 0.7 0.611358
Target:  5'- -cCGCUGAaggCGCGGCGguagCUGgccaggCCCGCg -3'
miRNA:   3'- cuGCGACUg--GCGCCGUa---GGCa-----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 89301 0.68 0.697419
Target:  5'- cACGUUGACCgagcGCGGCAgcgaGUUCUGCa -3'
miRNA:   3'- cUGCGACUGG----CGCCGUagg-CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 90121 0.72 0.507956
Target:  5'- uGGCGCcgccggccgGAggccCCGCGGCcaccucGUCCGUCCUGCc -3'
miRNA:   3'- -CUGCGa--------CU----GGCGCCG------UAGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 91195 0.66 0.829396
Target:  5'- aGCGCcgucggcGugCGCGGCAUCgG-CgCCGCc -3'
miRNA:   3'- cUGCGa------CugGCGCCGUAGgCaG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 93163 1.11 0.001457
Target:  5'- uGACGCUGACCGCGGCAUCCGUCCCGCg -3'
miRNA:   3'- -CUGCGACUGGCGCCGUAGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 94372 0.7 0.615194
Target:  5'- cGACGCgcguuacGGCCGCGGCgagcugucggcugguGgcgCCGUagaCCCGCg -3'
miRNA:   3'- -CUGCGa------CUGGCGCCG---------------Ua--GGCA---GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.