miRNA display CGI


Results 61 - 80 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 96855 0.7 0.592216
Target:  5'- cGCGCUGucGCCGCgGGCG-CCGUUCUGg -3'
miRNA:   3'- cUGCGAC--UGGCG-CCGUaGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 96964 0.66 0.837192
Target:  5'- -cUGCUG-CCGCgccugcugcgccGGcCGUCCGUCgCGCu -3'
miRNA:   3'- cuGCGACuGGCG------------CC-GUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 100422 0.74 0.396549
Target:  5'- cGCGCUGACCGC-GCAgaacaCGUgCCGCu -3'
miRNA:   3'- cUGCGACUGGCGcCGUag---GCAgGGCG- -5'
15839 3' -60.5 NC_004065.1 + 100561 0.69 0.659342
Target:  5'- -cCGCUGGugcgcUUGCGGCuuuuuUCCG-CCCGCg -3'
miRNA:   3'- cuGCGACU-----GGCGCCGu----AGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 101553 0.69 0.640158
Target:  5'- cGGCGCUGGCaGUGGUagccugAUCgCG-CCCGCg -3'
miRNA:   3'- -CUGCGACUGgCGCCG------UAG-GCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 102803 0.67 0.770776
Target:  5'- cGCGCccGAuccUCGCGGCcgCCGcUCCCGa -3'
miRNA:   3'- cUGCGa-CU---GGCGCCGuaGGC-AGGGCg -5'
15839 3' -60.5 NC_004065.1 + 104152 0.66 0.837192
Target:  5'- -uCGCcuuCCGCGGCgguGUCgGUCgCCGCu -3'
miRNA:   3'- cuGCGacuGGCGCCG---UAGgCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 109438 0.71 0.557106
Target:  5'- cGCGCUGGCgGCGcguguaucgccucacGCAgaucgagagccugUCCGUCUCGCa -3'
miRNA:   3'- cUGCGACUGgCGC---------------CGU-------------AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 109607 0.67 0.752938
Target:  5'- cGCGCUcgacccccgGGCCGCGGUgcccaccaccGUCgagggCGUCCUGCg -3'
miRNA:   3'- cUGCGA---------CUGGCGCCG----------UAG-----GCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 109916 0.69 0.678447
Target:  5'- -uCGUccGCCGCGGCcgCCGUCgCGUc -3'
miRNA:   3'- cuGCGacUGGCGCCGuaGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 110402 0.71 0.542101
Target:  5'- cACGCcacGGCCGaCGGCGUCuccuccgccgccggCGUCCUGCa -3'
miRNA:   3'- cUGCGa--CUGGC-GCCGUAG--------------GCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 110560 0.67 0.788178
Target:  5'- gGACGCUucggcGGuCCGCcaGGCGUCgGUCUCGg -3'
miRNA:   3'- -CUGCGA-----CU-GGCG--CCGUAGgCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 113411 0.69 0.66317
Target:  5'- cGACGUcgUGGCCagggagcugcgcagaGCGGCggCCGgggggCCCGCc -3'
miRNA:   3'- -CUGCG--ACUGG---------------CGCCGuaGGCa----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 115156 0.69 0.668908
Target:  5'- -cCGCcGGCCgGCGGCA-CCGUCgUCGCc -3'
miRNA:   3'- cuGCGaCUGG-CGCCGUaGGCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 116632 0.69 0.668908
Target:  5'- cGACGUcgcgaggGAgCCGCaGGCGUUCGUCCUGa -3'
miRNA:   3'- -CUGCGa------CU-GGCG-CCGUAGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 117042 0.66 0.829396
Target:  5'- aGACGCUGcACCGCGccuucaGCGaaCGUUcggCCGCg -3'
miRNA:   3'- -CUGCGAC-UGGCGC------CGUagGCAG---GGCG- -5'
15839 3' -60.5 NC_004065.1 + 117393 0.72 0.498881
Target:  5'- cGACGCUcGGCCGCGcGCG-CUGggCUCGCg -3'
miRNA:   3'- -CUGCGA-CUGGCGC-CGUaGGCa-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 118163 0.68 0.725498
Target:  5'- -cCGa-GACCGCGGCGgcggCCGUCaCgGCu -3'
miRNA:   3'- cuGCgaCUGGCGCCGUa---GGCAG-GgCG- -5'
15839 3' -60.5 NC_004065.1 + 119627 0.69 0.678447
Target:  5'- aGACGCcgucGGCCGUGGCGUguUCGaacggCCUGCg -3'
miRNA:   3'- -CUGCGa---CUGGCGCCGUA--GGCa----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 120107 0.68 0.725498
Target:  5'- gGACGCgacggcGGCCGCGGCGgacgagCCGggaCCCc- -3'
miRNA:   3'- -CUGCGa-----CUGGCGCCGUa-----GGCa--GGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.