miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 224690 0.66 0.813336
Target:  5'- gGACGC-GACCG-GGUagAUCC-UCUCGCa -3'
miRNA:   3'- -CUGCGaCUGGCgCCG--UAGGcAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 223084 0.68 0.734725
Target:  5'- cGACGCaGcuuCCGaCGGCGgacgccgaggCCGUgCCCGCa -3'
miRNA:   3'- -CUGCGaCu--GGC-GCCGUa---------GGCA-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 211870 0.69 0.677495
Target:  5'- aACGCc--CCGCGGacgauaccgccaaCAUcCCGUCCCGCg -3'
miRNA:   3'- cUGCGacuGGCGCC-------------GUA-GGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 208042 0.76 0.289248
Target:  5'- cGGCG-UGGCCGUGGCGgcccucaCCGUCCUGCc -3'
miRNA:   3'- -CUGCgACUGGCGCCGUa------GGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 203506 0.7 0.611358
Target:  5'- --gGCUGuGCCgGCGGgGUCCGUCgCGUg -3'
miRNA:   3'- cugCGAC-UGG-CGCCgUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 202000 0.66 0.829396
Target:  5'- -uCGUUGGCCGCcaacgcgauGGCGUCC-UCCUcgGCg -3'
miRNA:   3'- cuGCGACUGGCG---------CCGUAGGcAGGG--CG- -5'
15839 3' -60.5 NC_004065.1 + 201177 0.67 0.796697
Target:  5'- aGCGCcGACaccaaGCGGCG--CGUCCCGg -3'
miRNA:   3'- cUGCGaCUGg----CGCCGUagGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 200444 0.67 0.761907
Target:  5'- cGCGgUcACCGCGGCcgCCGUCagauaGCg -3'
miRNA:   3'- cUGCgAcUGGCGCCGuaGGCAGgg---CG- -5'
15839 3' -60.5 NC_004065.1 + 200011 0.67 0.788178
Target:  5'- uGACGg-GcACCGCGGUcgucaggggcagGUgCCGUUCCGCg -3'
miRNA:   3'- -CUGCgaC-UGGCGCCG------------UA-GGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 199447 0.66 0.837192
Target:  5'- aGGCGCUcGCCGCGGCGgaaCGggggCUgGUa -3'
miRNA:   3'- -CUGCGAcUGGCGCCGUag-GCa---GGgCG- -5'
15839 3' -60.5 NC_004065.1 + 198910 0.68 0.706837
Target:  5'- aGACGgUGACgGUGGUGcCUG-CCCGCu -3'
miRNA:   3'- -CUGCgACUGgCGCCGUaGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 198655 0.67 0.779535
Target:  5'- -cCGCcGGCCGau-CAgacUCCGUCCCGCg -3'
miRNA:   3'- cuGCGaCUGGCgccGU---AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 196404 0.66 0.837192
Target:  5'- aACGCgaUGGCCuuGGCcaugCCGgCCCGCa -3'
miRNA:   3'- cUGCG--ACUGGcgCCGua--GGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 195778 0.68 0.743874
Target:  5'- cGCGCUGACCaUGGCGgaCCGcgggCCCuGCg -3'
miRNA:   3'- cUGCGACUGGcGCCGUa-GGCa---GGG-CG- -5'
15839 3' -60.5 NC_004065.1 + 194114 0.66 0.847829
Target:  5'- -uCGCaGAcCCGCGGguaucgguacggccuCGUCUGUCCCGa -3'
miRNA:   3'- cuGCGaCU-GGCGCC---------------GUAGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 192805 0.67 0.761907
Target:  5'- cAUGgaGACgGCGGCGUCUGggCgCUGCg -3'
miRNA:   3'- cUGCgaCUGgCGCCGUAGGCa-G-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 185178 0.67 0.779535
Target:  5'- cGACGCUG-CUcCGGCccgugucgcuGUCCGUgUCGCg -3'
miRNA:   3'- -CUGCGACuGGcGCCG----------UAGGCAgGGCG- -5'
15839 3' -60.5 NC_004065.1 + 180123 0.69 0.659342
Target:  5'- cGACGaugGACgGCGGguUCCGUCUgGa -3'
miRNA:   3'- -CUGCga-CUGgCGCCguAGGCAGGgCg -5'
15839 3' -60.5 NC_004065.1 + 179402 0.68 0.725498
Target:  5'- --gGCUGuauCCagGUGGCcUCCGUCCCGa -3'
miRNA:   3'- cugCGACu--GG--CGCCGuAGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 173380 0.7 0.630555
Target:  5'- cGACGgUGaaggguGCCGCGGCcgCUGcCaCCGCa -3'
miRNA:   3'- -CUGCgAC------UGGCGCCGuaGGCaG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.