miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 172210 0.66 0.837192
Target:  5'- gGACGCUGAucucgucguccCCGuCGG-GUCC-UCCCGUc -3'
miRNA:   3'- -CUGCGACU-----------GGC-GCCgUAGGcAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 169581 0.66 0.829396
Target:  5'- -cCGCUG-UCGCGGC-UCCGgccggUUCGCg -3'
miRNA:   3'- cuGCGACuGGCGCCGuAGGCa----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 169118 0.7 0.58268
Target:  5'- aGACGCgGGCCGCGGCcagCaguUCCCGa -3'
miRNA:   3'- -CUGCGaCUGGCGCCGua-Ggc-AGGGCg -5'
15839 3' -60.5 NC_004065.1 + 168627 0.67 0.788178
Target:  5'- uGGCGCUGguGCCGCgGGCGgagCCGg--CGCg -3'
miRNA:   3'- -CUGCGAC--UGGCG-CCGUa--GGCaggGCG- -5'
15839 3' -60.5 NC_004065.1 + 167885 0.67 0.788178
Target:  5'- --aGCUGAUccccuccuguaCGCGGCGacgaugCCGccUCCCGCg -3'
miRNA:   3'- cugCGACUG-----------GCGCCGUa-----GGC--AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 167627 0.7 0.611358
Target:  5'- -gUGCUGGauCCGCGGCcgCCaccCCCGCc -3'
miRNA:   3'- cuGCGACU--GGCGCCGuaGGca-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 167545 0.68 0.734725
Target:  5'- aACGCUaccGCCGCGGCcgcuccugCCGUCgCCGg -3'
miRNA:   3'- cUGCGAc--UGGCGCCGua------GGCAG-GGCg -5'
15839 3' -60.5 NC_004065.1 + 167404 0.7 0.592216
Target:  5'- aAUGCUGcuGCCGCGGCugcugCCG-CCgGCg -3'
miRNA:   3'- cUGCGAC--UGGCGCCGua---GGCaGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 163491 0.66 0.808403
Target:  5'- cGGCGCcggUGGCgGCGGCuUCaauucuucggaagaaCGUCgCCGCg -3'
miRNA:   3'- -CUGCG---ACUGgCGCCGuAG---------------GCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 163413 0.67 0.796697
Target:  5'- -cCGCaGcCCGCGGC-UCCGgauccugUCCGCg -3'
miRNA:   3'- cuGCGaCuGGCGCCGuAGGCa------GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 162203 0.7 0.630555
Target:  5'- -cUGCUG-CgGCGGCAcgUCCGgcgCCCGUc -3'
miRNA:   3'- cuGCGACuGgCGCCGU--AGGCa--GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 160625 0.68 0.734725
Target:  5'- uGGCGCc--CCGuCGGCAgCUGUUCCGCc -3'
miRNA:   3'- -CUGCGacuGGC-GCCGUaGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 158362 0.67 0.788178
Target:  5'- -cCGCUGcuGCUGCugaggaGGCccUUCGUCCCGCg -3'
miRNA:   3'- cuGCGAC--UGGCG------CCGu-AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 153862 0.74 0.412667
Target:  5'- cGACGCUGAUCGCgacgacgacgguGGUGUUCGUggggaCCCGCu -3'
miRNA:   3'- -CUGCGACUGGCG------------CCGUAGGCA-----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 153278 0.68 0.743874
Target:  5'- uGACGa-GGCCGcCGGCG-CCGcgCCCGUc -3'
miRNA:   3'- -CUGCgaCUGGC-GCCGUaGGCa-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 149702 0.66 0.813336
Target:  5'- aACGCcggggGGCCGCGGCcgcgCCGgCCCu- -3'
miRNA:   3'- cUGCGa----CUGGCGCCGua--GGCaGGGcg -5'
15839 3' -60.5 NC_004065.1 + 149207 0.69 0.640158
Target:  5'- cGGCGCUG-CUGCuGUcgCUGcUCCCGCu -3'
miRNA:   3'- -CUGCGACuGGCGcCGuaGGC-AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 148488 0.66 0.844824
Target:  5'- uGGCGCgUGAuCCuCGG-GUCCGUCUCGUc -3'
miRNA:   3'- -CUGCG-ACU-GGcGCCgUAGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 141601 0.67 0.761907
Target:  5'- aACGC-GACgGCGGCGggcUCCGcugCCgGCg -3'
miRNA:   3'- cUGCGaCUGgCGCCGU---AGGCa--GGgCG- -5'
15839 3' -60.5 NC_004065.1 + 139891 0.69 0.668908
Target:  5'- gGACGaggUGGCCGCGGgGccUCCGgCCgGCg -3'
miRNA:   3'- -CUGCg--ACUGGCGCCgU--AGGCaGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.