miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 138848 0.73 0.429183
Target:  5'- cGGCGCUu-CCGCGGCcgUCG-CCUGCg -3'
miRNA:   3'- -CUGCGAcuGGCGCCGuaGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 138770 0.69 0.687954
Target:  5'- cGGCGCgG-UCGaUGGCGUCaagGUCCCGCu -3'
miRNA:   3'- -CUGCGaCuGGC-GCCGUAGg--CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 136619 0.66 0.821442
Target:  5'- gGGCGCUGGuCCGaGGCggCgGUCCggaGCg -3'
miRNA:   3'- -CUGCGACU-GGCgCCGuaGgCAGGg--CG- -5'
15839 3' -60.5 NC_004065.1 + 133173 0.66 0.844824
Target:  5'- cGGCGC---CCGCGGCGacagcgcgCCGUCUCGa -3'
miRNA:   3'- -CUGCGacuGGCGCCGUa-------GGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 132495 0.71 0.526308
Target:  5'- uGGCGCUGAUCGCGuCGUUCG-CgCGCa -3'
miRNA:   3'- -CUGCGACUGGCGCcGUAGGCaGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 132343 0.66 0.829396
Target:  5'- cGGCaGC-GACCGCGaGUAUCaCaUCCUGCg -3'
miRNA:   3'- -CUG-CGaCUGGCGC-CGUAG-GcAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 131872 0.66 0.805086
Target:  5'- cGGCGgUGGCgGCGGCGaCUaUCaCCGCc -3'
miRNA:   3'- -CUGCgACUGgCGCCGUaGGcAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 131763 0.66 0.805086
Target:  5'- aGGCGCgcGCCcagGGCcgCCGUCCCGa -3'
miRNA:   3'- -CUGCGacUGGcg-CCGuaGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 128188 0.68 0.716199
Target:  5'- cGACGCcc-CCGCGaGCAUUacuagugccaGUCCCGCc -3'
miRNA:   3'- -CUGCGacuGGCGC-CGUAGg---------CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 127458 0.7 0.592216
Target:  5'- gGACGCUGaugGCCGCGGgAcCCGaCCCcgGCg -3'
miRNA:   3'- -CUGCGAC---UGGCGCCgUaGGCaGGG--CG- -5'
15839 3' -60.5 NC_004065.1 + 127409 0.69 0.640158
Target:  5'- cGACGUUGugCa-GGCGUCCcGUCCCa- -3'
miRNA:   3'- -CUGCGACugGcgCCGUAGG-CAGGGcg -5'
15839 3' -60.5 NC_004065.1 + 126495 0.67 0.794155
Target:  5'- cGCGCUGcacCCGCGucgccaugcgccgcGCGaUCGUCCCGUg -3'
miRNA:   3'- cUGCGACu--GGCGC--------------CGUaGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 124365 0.69 0.668908
Target:  5'- cGAuCGUc-ACCGCGGCAUCCG--CCGCg -3'
miRNA:   3'- -CU-GCGacUGGCGCCGUAGGCagGGCG- -5'
15839 3' -60.5 NC_004065.1 + 124311 0.66 0.813336
Target:  5'- cACGCgGAugUCGUGGUucgCCGUCgCCGCc -3'
miRNA:   3'- cUGCGaCU--GGCGCCGua-GGCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 123678 0.68 0.724571
Target:  5'- cGCGCUGcCCGUgcagcagcgccgGGCcgcccuuGUCCGUCuuGCg -3'
miRNA:   3'- cUGCGACuGGCG------------CCG-------UAGGCAGggCG- -5'
15839 3' -60.5 NC_004065.1 + 122268 0.66 0.844824
Target:  5'- cGCGCcgacaccGACCuGgGGCAUCCG-CCgGCc -3'
miRNA:   3'- cUGCGa------CUGG-CgCCGUAGGCaGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 121301 0.66 0.821442
Target:  5'- gGAUGCUcACCG-GGCAgCgGcCCCGCa -3'
miRNA:   3'- -CUGCGAcUGGCgCCGUaGgCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 120146 0.75 0.3507
Target:  5'- cGACGC-GGCCGCGGCGacgCCGguggCaCCGCc -3'
miRNA:   3'- -CUGCGaCUGGCGCCGUa--GGCa---G-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 120118 0.73 0.463347
Target:  5'- cGGCGCuUGACuCGcCGGCG-CCGUCCCu- -3'
miRNA:   3'- -CUGCG-ACUG-GC-GCCGUaGGCAGGGcg -5'
15839 3' -60.5 NC_004065.1 + 120107 0.68 0.725498
Target:  5'- gGACGCgacggcGGCCGCGGCGgacgagCCGggaCCCc- -3'
miRNA:   3'- -CUGCGa-----CUGGCGCCGUa-----GGCa--GGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.