miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 21946 0.7 0.630555
Target:  5'- uGAUGCUGAUgGCGGCcagggCCGUCguCgGCa -3'
miRNA:   3'- -CUGCGACUGgCGCCGua---GGCAG--GgCG- -5'
15839 3' -60.5 NC_004065.1 + 26949 0.71 0.535578
Target:  5'- -cCGCUccggcGGCCGCGGCGggcUCCGgagCUCGCc -3'
miRNA:   3'- cuGCGA-----CUGGCGCCGU---AGGCa--GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 110402 0.71 0.542101
Target:  5'- cACGCcacGGCCGaCGGCGUCuccuccgccgccggCGUCCUGCa -3'
miRNA:   3'- cUGCGa--CUGGC-GCCGUAG--------------GCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 109438 0.71 0.557106
Target:  5'- cGCGCUGGCgGCGcguguaucgccucacGCAgaucgagagccugUCCGUCUCGCa -3'
miRNA:   3'- cUGCGACUGgCGC---------------CGU-------------AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 33893 0.71 0.563708
Target:  5'- aGGCGagggugaGACCGCGGaugCCGUaCCCGCc -3'
miRNA:   3'- -CUGCga-----CUGGCGCCguaGGCA-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 169118 0.7 0.58268
Target:  5'- aGACGCgGGCCGCGGCcagCaguUCCCGa -3'
miRNA:   3'- -CUGCGaCUGGCGCCGua-Ggc-AGGGCg -5'
15839 3' -60.5 NC_004065.1 + 127458 0.7 0.592216
Target:  5'- gGACGCUGaugGCCGCGGgAcCCGaCCCcgGCg -3'
miRNA:   3'- -CUGCGAC---UGGCGCCgUaGGCaGGG--CG- -5'
15839 3' -60.5 NC_004065.1 + 96855 0.7 0.592216
Target:  5'- cGCGCUGucGCCGCgGGCG-CCGUUCUGg -3'
miRNA:   3'- cUGCGAC--UGGCG-CCGUaGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 22047 0.7 0.601777
Target:  5'- --gGCaGGCCGCGGUAUCCcUCCgGUc -3'
miRNA:   3'- cugCGaCUGGCGCCGUAGGcAGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 90121 0.72 0.507956
Target:  5'- uGGCGCcgccggccgGAggccCCGCGGCcaccucGUCCGUCCUGCc -3'
miRNA:   3'- -CUGCGa--------CU----GGCGCCG------UAGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 88374 0.72 0.507956
Target:  5'- -cCGC-GGCCGCGGCAccgccaccgcccUCCGUCgCCGa -3'
miRNA:   3'- cuGCGaCUGGCGCCGU------------AGGCAG-GGCg -5'
15839 3' -60.5 NC_004065.1 + 117393 0.72 0.498881
Target:  5'- cGACGCUcGGCCGCGcGCG-CUGggCUCGCg -3'
miRNA:   3'- -CUGCGA-CUGGCGC-CGUaGGCa-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 75322 0.76 0.322291
Target:  5'- gGACGCaGuagaCGCGGCGUCCGUCgCGUu -3'
miRNA:   3'- -CUGCGaCug--GCGCCGUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 77230 0.75 0.343434
Target:  5'- cACGCUGAUCGUGGCcaCCGaguUCCUGCa -3'
miRNA:   3'- cUGCGACUGGCGCCGuaGGC---AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 100422 0.74 0.396549
Target:  5'- cGCGCUGACCGC-GCAgaacaCGUgCCGCu -3'
miRNA:   3'- cUGCGACUGGCGcCGUag---GCAgGGCG- -5'
15839 3' -60.5 NC_004065.1 + 153862 0.74 0.412667
Target:  5'- cGACGCUGAUCGCgacgacgacgguGGUGUUCGUggggaCCCGCu -3'
miRNA:   3'- -CUGCGACUGGCG------------CCGUAGGCA-----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 38157 0.73 0.420876
Target:  5'- uGACGCUGGaagaCGCGGCgAUCCGcgCCaGCg -3'
miRNA:   3'- -CUGCGACUg---GCGCCG-UAGGCa-GGgCG- -5'
15839 3' -60.5 NC_004065.1 + 26011 0.73 0.437586
Target:  5'- -uCGCUGACCGUGGCcucggcgUCGUCCaccaGCg -3'
miRNA:   3'- cuGCGACUGGCGCCGua-----GGCAGGg---CG- -5'
15839 3' -60.5 NC_004065.1 + 120118 0.73 0.463347
Target:  5'- cGGCGCuUGACuCGcCGGCG-CCGUCCCu- -3'
miRNA:   3'- -CUGCG-ACUG-GC-GCCGUaGGCAGGGcg -5'
15839 3' -60.5 NC_004065.1 + 72026 0.72 0.472109
Target:  5'- cGACGCUGAUgGCGGCG-CUGcaCCCGg -3'
miRNA:   3'- -CUGCGACUGgCGCCGUaGGCa-GGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.