miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 38157 0.73 0.420876
Target:  5'- uGACGCUGGaagaCGCGGCgAUCCGcgCCaGCg -3'
miRNA:   3'- -CUGCGACUg---GCGCCG-UAGGCa-GGgCG- -5'
15839 3' -60.5 NC_004065.1 + 153862 0.74 0.412667
Target:  5'- cGACGCUGAUCGCgacgacgacgguGGUGUUCGUggggaCCCGCu -3'
miRNA:   3'- -CUGCGACUGGCG------------CCGUAGGCA-----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 100422 0.74 0.396549
Target:  5'- cGCGCUGACCGC-GCAgaacaCGUgCCGCu -3'
miRNA:   3'- cUGCGACUGGCGcCGUag---GCAgGGCG- -5'
15839 3' -60.5 NC_004065.1 + 77230 0.75 0.343434
Target:  5'- cACGCUGAUCGUGGCcaCCGaguUCCUGCa -3'
miRNA:   3'- cUGCGACUGGCGCCGuaGGC---AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 75322 0.76 0.322291
Target:  5'- gGACGCaGuagaCGCGGCGUCCGUCgCGUu -3'
miRNA:   3'- -CUGCGaCug--GCGCCGUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 109438 0.71 0.557106
Target:  5'- cGCGCUGGCgGCGcguguaucgccucacGCAgaucgagagccugUCCGUCUCGCa -3'
miRNA:   3'- cUGCGACUGgCGC---------------CGU-------------AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 33893 0.71 0.563708
Target:  5'- aGGCGagggugaGACCGCGGaugCCGUaCCCGCc -3'
miRNA:   3'- -CUGCga-----CUGGCGCCguaGGCA-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 109916 0.69 0.678447
Target:  5'- -uCGUccGCCGCGGCcgCCGUCgCGUc -3'
miRNA:   3'- cuGCGacUGGCGCCGuaGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 115156 0.69 0.668908
Target:  5'- -cCGCcGGCCgGCGGCA-CCGUCgUCGCc -3'
miRNA:   3'- cuGCGaCUGG-CGCCGUaGGCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 113411 0.69 0.66317
Target:  5'- cGACGUcgUGGCCagggagcugcgcagaGCGGCggCCGgggggCCCGCc -3'
miRNA:   3'- -CUGCG--ACUGG---------------CGCCGuaGGCa----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 68155 0.69 0.660299
Target:  5'- gGACGCggUGAUCGCGGCGgcgcgcgcgacggagCUGUcggcCCCGCc -3'
miRNA:   3'- -CUGCG--ACUGGCGCCGUa--------------GGCA----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 100561 0.69 0.659342
Target:  5'- -cCGCUGGugcgcUUGCGGCuuuuuUCCG-CCCGCg -3'
miRNA:   3'- cuGCGACU-----GGCGCCGu----AGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 17666 0.69 0.659342
Target:  5'- gGAUGaC-GACCGaCGGuCGUCCGUCgCGCc -3'
miRNA:   3'- -CUGC-GaCUGGC-GCC-GUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 149207 0.69 0.640158
Target:  5'- cGGCGCUG-CUGCuGUcgCUGcUCCCGCu -3'
miRNA:   3'- -CUGCGACuGGCGcCGuaGGC-AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 60770 0.7 0.630555
Target:  5'- -cCGCacagGGCCGCGGCcucCCGcCUCGCg -3'
miRNA:   3'- cuGCGa---CUGGCGCCGua-GGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 21946 0.7 0.630555
Target:  5'- uGAUGCUGAUgGCGGCcagggCCGUCguCgGCa -3'
miRNA:   3'- -CUGCGACUGgCGCCGua---GGCAG--GgCG- -5'
15839 3' -60.5 NC_004065.1 + 22047 0.7 0.601777
Target:  5'- --gGCaGGCCGCGGUAUCCcUCCgGUc -3'
miRNA:   3'- cugCGaCUGGCGCCGUAGGcAGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 96855 0.7 0.592216
Target:  5'- cGCGCUGucGCCGCgGGCG-CCGUUCUGg -3'
miRNA:   3'- cUGCGAC--UGGCG-CCGUaGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 127458 0.7 0.592216
Target:  5'- gGACGCUGaugGCCGCGGgAcCCGaCCCcgGCg -3'
miRNA:   3'- -CUGCGAC---UGGCGCCgUaGGCaGGG--CG- -5'
15839 3' -60.5 NC_004065.1 + 169118 0.7 0.58268
Target:  5'- aGACGCgGGCCGCGGCcagCaguUCCCGa -3'
miRNA:   3'- -CUGCGaCUGGCGCCGua-Ggc-AGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.