miRNA display CGI


Results 61 - 80 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 36542 0.68 0.716199
Target:  5'- -uCGCUaa-CG-GGCAUCCGUCCgGCg -3'
miRNA:   3'- cuGCGAcugGCgCCGUAGGCAGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 123678 0.68 0.724571
Target:  5'- cGCGCUGcCCGUgcagcagcgccgGGCcgcccuuGUCCGUCuuGCg -3'
miRNA:   3'- cUGCGACuGGCG------------CCG-------UAGGCAGggCG- -5'
15839 3' -60.5 NC_004065.1 + 22917 0.68 0.725498
Target:  5'- aGugGC-GGCgGuCGGCGguUCCGUCUCGUc -3'
miRNA:   3'- -CugCGaCUGgC-GCCGU--AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 64007 0.68 0.725498
Target:  5'- aGACGgUGACgGCcucccGCGUCCGucguuUCCUGCa -3'
miRNA:   3'- -CUGCgACUGgCGc----CGUAGGC-----AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 118163 0.68 0.725498
Target:  5'- -cCGa-GACCGCGGCGgcggCCGUCaCgGCu -3'
miRNA:   3'- cuGCgaCUGGCGCCGUa---GGCAG-GgCG- -5'
15839 3' -60.5 NC_004065.1 + 1566 0.68 0.734725
Target:  5'- --aGCUGACgGCGugccugcgaGCGaccUCCGUCUCGCc -3'
miRNA:   3'- cugCGACUGgCGC---------CGU---AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 223084 0.68 0.734725
Target:  5'- cGACGCaGcuuCCGaCGGCGgacgccgaggCCGUgCCCGCa -3'
miRNA:   3'- -CUGCGaCu--GGC-GCCGUa---------GGCA-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 89301 0.68 0.697419
Target:  5'- cACGUUGACCgagcGCGGCAgcgaGUUCUGCa -3'
miRNA:   3'- cUGCGACUGG----CGCCGUagg-CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 109916 0.69 0.678447
Target:  5'- -uCGUccGCCGCGGCcgCCGUCgCGUc -3'
miRNA:   3'- cuGCGacUGGCGCCGuaGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 21946 0.7 0.630555
Target:  5'- uGAUGCUGAUgGCGGCcagggCCGUCguCgGCa -3'
miRNA:   3'- -CUGCGACUGgCGCCGua---GGCAG--GgCG- -5'
15839 3' -60.5 NC_004065.1 + 60770 0.7 0.630555
Target:  5'- -cCGCacagGGCCGCGGCcucCCGcCUCGCg -3'
miRNA:   3'- cuGCGa---CUGGCGCCGua-GGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 149207 0.69 0.640158
Target:  5'- cGGCGCUG-CUGCuGUcgCUGcUCCCGCu -3'
miRNA:   3'- -CUGCGACuGGCGcCGuaGGC-AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 17666 0.69 0.659342
Target:  5'- gGAUGaC-GACCGaCGGuCGUCCGUCgCGCc -3'
miRNA:   3'- -CUGC-GaCUGGC-GCC-GUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 100561 0.69 0.659342
Target:  5'- -cCGCUGGugcgcUUGCGGCuuuuuUCCG-CCCGCg -3'
miRNA:   3'- cuGCGACU-----GGCGCCGu----AGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 68155 0.69 0.660299
Target:  5'- gGACGCggUGAUCGCGGCGgcgcgcgcgacggagCUGUcggcCCCGCc -3'
miRNA:   3'- -CUGCG--ACUGGCGCCGUa--------------GGCA----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 113411 0.69 0.66317
Target:  5'- cGACGUcgUGGCCagggagcugcgcagaGCGGCggCCGgggggCCCGCc -3'
miRNA:   3'- -CUGCG--ACUGG---------------CGCCGuaGGCa----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 115156 0.69 0.668908
Target:  5'- -cCGCcGGCCgGCGGCA-CCGUCgUCGCc -3'
miRNA:   3'- cuGCGaCUGG-CGCCGUaGGCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 66383 0.66 0.844824
Target:  5'- -cCGCUG-CCGCuGCcgCCGcCgCCGCc -3'
miRNA:   3'- cuGCGACuGGCGcCGuaGGCaG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 208042 0.76 0.289248
Target:  5'- cGGCG-UGGCCGUGGCGgcccucaCCGUCCUGCc -3'
miRNA:   3'- -CUGCgACUGGCGCCGUa------GGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 120146 0.75 0.3507
Target:  5'- cGACGC-GGCCGCGGCGacgCCGguggCaCCGCc -3'
miRNA:   3'- -CUGCGaCUGGCGCCGUa--GGCa---G-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.