miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 93163 1.11 0.001457
Target:  5'- uGACGCUGACCGCGGCAUCCGUCCCGCg -3'
miRNA:   3'- -CUGCGACUGGCGCCGUAGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 127409 0.69 0.640158
Target:  5'- cGACGUUGugCa-GGCGUCCcGUCCCa- -3'
miRNA:   3'- -CUGCGACugGcgCCGUAGG-CAGGGcg -5'
15839 3' -60.5 NC_004065.1 + 29584 0.69 0.659342
Target:  5'- uGACgGC-GGCCGCGGUGaccgCgGUCCUGCa -3'
miRNA:   3'- -CUG-CGaCUGGCGCCGUa---GgCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 66383 0.66 0.844824
Target:  5'- -cCGCUG-CCGCuGCcgCCGcCgCCGCc -3'
miRNA:   3'- cuGCGACuGGCGcCGuaGGCaG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 138848 0.73 0.429183
Target:  5'- cGGCGCUu-CCGCGGCcgUCG-CCUGCg -3'
miRNA:   3'- -CUGCGAcuGGCGCCGuaGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 80322 0.73 0.45467
Target:  5'- cGGCGC-GGCCGCGGCcccccggcGUUCGaCCUGCa -3'
miRNA:   3'- -CUGCGaCUGGCGCCG--------UAGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 86891 0.72 0.507956
Target:  5'- cGACGCaGGUCGCGGCGcCgGUCUCGCc -3'
miRNA:   3'- -CUGCGaCUGGCGCCGUaGgCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 132495 0.71 0.526308
Target:  5'- uGGCGCUGAUCGCGuCGUUCG-CgCGCa -3'
miRNA:   3'- -CUGCGACUGGCGCcGUAGGCaGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 167627 0.7 0.611358
Target:  5'- -gUGCUGGauCCGCGGCcgCCaccCCCGCc -3'
miRNA:   3'- cuGCGACU--GGCGCCGuaGGca-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 173380 0.7 0.630555
Target:  5'- cGACGgUGaaggguGCCGCGGCcgCUGcCaCCGCa -3'
miRNA:   3'- -CUGCgAC------UGGCGCCGuaGGCaG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 88932 0.7 0.611358
Target:  5'- -cCGCUGAaggCGCGGCGguagCUGgccaggCCCGCg -3'
miRNA:   3'- cuGCGACUg--GCGCCGUa---GGCa-----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 167404 0.7 0.592216
Target:  5'- aAUGCUGcuGCCGCGGCugcugCCG-CCgGCg -3'
miRNA:   3'- cUGCGAC--UGGCGCCGua---GGCaGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 208042 0.76 0.289248
Target:  5'- cGGCG-UGGCCGUGGCGgcccucaCCGUCCUGCc -3'
miRNA:   3'- -CUGCgACUGGCGCCGUa------GGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 94372 0.7 0.615194
Target:  5'- cGACGCgcguuacGGCCGCGGCgagcugucggcugguGgcgCCGUagaCCCGCg -3'
miRNA:   3'- -CUGCGa------CUGGCGCCG---------------Ua--GGCA---GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 120146 0.75 0.3507
Target:  5'- cGACGC-GGCCGCGGCGacgCCGguggCaCCGCc -3'
miRNA:   3'- -CUGCGaCUGGCGCCGUa--GGCa---G-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 67585 0.71 0.558048
Target:  5'- aGCGCaggGGCCucggcucgagauagcGCGGCGUCCGUCgcaCCGUa -3'
miRNA:   3'- cUGCGa--CUGG---------------CGCCGUAGGCAG---GGCG- -5'
15839 3' -60.5 NC_004065.1 + 162203 0.7 0.630555
Target:  5'- -cUGCUG-CgGCGGCAcgUCCGgcgCCCGUc -3'
miRNA:   3'- cuGCGACuGgCGCCGU--AGGCa--GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 101553 0.69 0.640158
Target:  5'- cGGCGCUGGCaGUGGUagccugAUCgCG-CCCGCg -3'
miRNA:   3'- -CUGCGACUGgCGCCG------UAG-GCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 60910 0.74 0.373146
Target:  5'- -cUGCUGGCCGCGGCccgcGUCUGUCaggaCGUg -3'
miRNA:   3'- cuGCGACUGGCGCCG----UAGGCAGg---GCG- -5'
15839 3' -60.5 NC_004065.1 + 41448 0.73 0.463347
Target:  5'- -gUGCUGGCCGUGGaGagCGUCCUGCu -3'
miRNA:   3'- cuGCGACUGGCGCCgUagGCAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.