miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 124365 0.69 0.668908
Target:  5'- cGAuCGUc-ACCGCGGCAUCCG--CCGCg -3'
miRNA:   3'- -CU-GCGacUGGCGCCGUAGGCagGGCG- -5'
15839 3' -60.5 NC_004065.1 + 29584 0.69 0.659342
Target:  5'- uGACgGC-GGCCGCGGUGaccgCgGUCCUGCa -3'
miRNA:   3'- -CUG-CGaCUGGCGCCGUa---GgCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 167404 0.7 0.592216
Target:  5'- aAUGCUGcuGCCGCGGCugcugCCG-CCgGCg -3'
miRNA:   3'- cUGCGAC--UGGCGCCGua---GGCaGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 60910 0.74 0.373146
Target:  5'- -cUGCUGGCCGCGGCccgcGUCUGUCaggaCGUg -3'
miRNA:   3'- cuGCGACUGGCGCCG----UAGGCAGg---GCG- -5'
15839 3' -60.5 NC_004065.1 + 160625 0.68 0.734725
Target:  5'- uGGCGCc--CCGuCGGCAgCUGUUCCGCc -3'
miRNA:   3'- -CUGCGacuGGC-GCCGUaGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 61383 0.69 0.687954
Target:  5'- cGACGgUcGCCGCgccGGC-UCCG-CCCGCg -3'
miRNA:   3'- -CUGCgAcUGGCG---CCGuAGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 127409 0.69 0.640158
Target:  5'- cGACGUUGugCa-GGCGUCCcGUCCCa- -3'
miRNA:   3'- -CUGCGACugGcgCCGUAGG-CAGGGcg -5'
15839 3' -60.5 NC_004065.1 + 120146 0.75 0.3507
Target:  5'- cGACGC-GGCCGCGGCGacgCCGguggCaCCGCc -3'
miRNA:   3'- -CUGCGaCUGGCGCCGUa--GGCa---G-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 30175 0.69 0.678447
Target:  5'- cGACGagUGcCUGCGGCGgugguggCCGUUCUGCa -3'
miRNA:   3'- -CUGCg-ACuGGCGCCGUa------GGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 208042 0.76 0.289248
Target:  5'- cGGCG-UGGCCGUGGCGgcccucaCCGUCCUGCc -3'
miRNA:   3'- -CUGCgACUGGCGCCGUa------GGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 101553 0.69 0.640158
Target:  5'- cGGCGCUGGCaGUGGUagccugAUCgCG-CCCGCg -3'
miRNA:   3'- -CUGCGACUGgCGCCG------UAG-GCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 139891 0.69 0.668908
Target:  5'- gGACGaggUGGCCGCGGgGccUCCGgCCgGCg -3'
miRNA:   3'- -CUGCg--ACUGGCGCCgU--AGGCaGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 94372 0.7 0.615194
Target:  5'- cGACGCgcguuacGGCCGCGGCgagcugucggcugguGgcgCCGUagaCCCGCg -3'
miRNA:   3'- -CUGCGa------CUGGCGCCG---------------Ua--GGCA---GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 167627 0.7 0.611358
Target:  5'- -gUGCUGGauCCGCGGCcgCCaccCCCGCc -3'
miRNA:   3'- cuGCGACU--GGCGCCGuaGGca-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 86891 0.72 0.507956
Target:  5'- cGACGCaGGUCGCGGCGcCgGUCUCGCc -3'
miRNA:   3'- -CUGCGaCUGGCGCCGUaGgCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 138848 0.73 0.429183
Target:  5'- cGGCGCUu-CCGCGGCcgUCG-CCUGCg -3'
miRNA:   3'- -CUGCGAcuGGCGCCGuaGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 141601 0.67 0.761907
Target:  5'- aACGC-GACgGCGGCGggcUCCGcugCCgGCg -3'
miRNA:   3'- cUGCGaCUGgCGCCGU---AGGCa--GGgCG- -5'
15839 3' -60.5 NC_004065.1 + 82407 0.68 0.743874
Target:  5'- -gUGCUguuguugacGACCGCGGUguugGUCUGgUCCUGCg -3'
miRNA:   3'- cuGCGA---------CUGGCGCCG----UAGGC-AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 179402 0.68 0.725498
Target:  5'- --gGCUGuauCCagGUGGCcUCCGUCCCGa -3'
miRNA:   3'- cugCGACu--GG--CGCCGuAGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 138770 0.69 0.687954
Target:  5'- cGGCGCgG-UCGaUGGCGUCaagGUCCCGCu -3'
miRNA:   3'- -CUGCGaCuGGC-GCCGUAGg--CAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.