Results 41 - 60 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15839 | 3' | -60.5 | NC_004065.1 | + | 167545 | 0.68 | 0.734725 |
Target: 5'- aACGCUaccGCCGCGGCcgcuccugCCGUCgCCGg -3' miRNA: 3'- cUGCGAc--UGGCGCCGua------GGCAG-GGCg -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 127409 | 0.69 | 0.640158 |
Target: 5'- cGACGUUGugCa-GGCGUCCcGUCCCa- -3' miRNA: 3'- -CUGCGACugGcgCCGUAGG-CAGGGcg -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 120146 | 0.75 | 0.3507 |
Target: 5'- cGACGC-GGCCGCGGCGacgCCGguggCaCCGCc -3' miRNA: 3'- -CUGCGaCUGGCGCCGUa--GGCa---G-GGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 120107 | 0.68 | 0.725498 |
Target: 5'- gGACGCgacggcGGCCGCGGCGgacgagCCGggaCCCc- -3' miRNA: 3'- -CUGCGa-----CUGGCGCCGUa-----GGCa--GGGcg -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 208042 | 0.76 | 0.289248 |
Target: 5'- cGGCG-UGGCCGUGGCGgcccucaCCGUCCUGCc -3' miRNA: 3'- -CUGCgACUGGCGCCGUa------GGCAGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 199447 | 0.66 | 0.837192 |
Target: 5'- aGGCGCUcGCCGCGGCGgaaCGggggCUgGUa -3' miRNA: 3'- -CUGCGAcUGGCGCCGUag-GCa---GGgCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 138848 | 0.73 | 0.429183 |
Target: 5'- cGGCGCUu-CCGCGGCcgUCG-CCUGCg -3' miRNA: 3'- -CUGCGAcuGGCGCCGuaGGCaGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 82284 | 0.66 | 0.829396 |
Target: 5'- -gUGUUGGCCGUGGUcUCCcugagggCCCGUa -3' miRNA: 3'- cuGCGACUGGCGCCGuAGGca-----GGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 136619 | 0.66 | 0.821442 |
Target: 5'- gGGCGCUGGuCCGaGGCggCgGUCCggaGCg -3' miRNA: 3'- -CUGCGACU-GGCgCCGuaGgCAGGg--CG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 158362 | 0.67 | 0.788178 |
Target: 5'- -cCGCUGcuGCUGCugaggaGGCccUUCGUCCCGCg -3' miRNA: 3'- cuGCGAC--UGGCG------CCGu-AGGCAGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 185178 | 0.67 | 0.779535 |
Target: 5'- cGACGCUG-CUcCGGCccgugucgcuGUCCGUgUCGCg -3' miRNA: 3'- -CUGCGACuGGcGCCG----------UAGGCAgGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 141601 | 0.67 | 0.761907 |
Target: 5'- aACGC-GACgGCGGCGggcUCCGcugCCgGCg -3' miRNA: 3'- cUGCGaCUGgCGCCGU---AGGCa--GGgCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 82407 | 0.68 | 0.743874 |
Target: 5'- -gUGCUguuguugacGACCGCGGUguugGUCUGgUCCUGCg -3' miRNA: 3'- cuGCGA---------CUGGCGCCG----UAGGC-AGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 198910 | 0.68 | 0.706837 |
Target: 5'- aGACGgUGACgGUGGUGcCUG-CCCGCu -3' miRNA: 3'- -CUGCgACUGgCGCCGUaGGCaGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 30175 | 0.69 | 0.678447 |
Target: 5'- cGACGagUGcCUGCGGCGgugguggCCGUUCUGCa -3' miRNA: 3'- -CUGCg-ACuGGCGCCGUa------GGCAGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 124365 | 0.69 | 0.668908 |
Target: 5'- cGAuCGUc-ACCGCGGCAUCCG--CCGCg -3' miRNA: 3'- -CU-GCGacUGGCGCCGUAGGCagGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 29584 | 0.69 | 0.659342 |
Target: 5'- uGACgGC-GGCCGCGGUGaccgCgGUCCUGCa -3' miRNA: 3'- -CUG-CGaCUGGCGCCGUa---GgCAGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 94372 | 0.7 | 0.615194 |
Target: 5'- cGACGCgcguuacGGCCGCGGCgagcugucggcugguGgcgCCGUagaCCCGCg -3' miRNA: 3'- -CUGCGa------CUGGCGCCG---------------Ua--GGCA---GGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 167627 | 0.7 | 0.611358 |
Target: 5'- -gUGCUGGauCCGCGGCcgCCaccCCCGCc -3' miRNA: 3'- cuGCGACU--GGCGCCGuaGGca-GGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 86891 | 0.72 | 0.507956 |
Target: 5'- cGACGCaGGUCGCGGCGcCgGUCUCGCc -3' miRNA: 3'- -CUGCGaCUGGCGCCGUaGgCAGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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