miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 173901 0.66 0.990685
Target:  5'- -uGCAGaAGGCGaGCGCCGCcGUcgucCGGGa -3'
miRNA:   3'- auUGUC-UCUGUgUGCGGUGaCA----GCCC- -5'
15839 5' -53.4 NC_004065.1 + 51800 0.66 0.990685
Target:  5'- aGGCAguggauGAGACACGCGCC-CgcaUGGGg -3'
miRNA:   3'- aUUGU------CUCUGUGUGCGGuGacaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 78060 0.66 0.990685
Target:  5'- cGGCGG-GGCGCACGaacCUGUCGaGGu -3'
miRNA:   3'- aUUGUCuCUGUGUGCgguGACAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 197455 0.66 0.990685
Target:  5'- ---uGGAGAUGauaAUGCCGCUGgUGGGg -3'
miRNA:   3'- auugUCUCUGUg--UGCGGUGACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 488 0.66 0.990685
Target:  5'- ----cGGGcCGCGCGCCGCguccgCGGGa -3'
miRNA:   3'- auuguCUCuGUGUGCGGUGaca--GCCC- -5'
15839 5' -53.4 NC_004065.1 + 165738 0.66 0.989942
Target:  5'- ----cGAGACGCGCGCCGCgccuuccaggaacUCGGa -3'
miRNA:   3'- auuguCUCUGUGUGCGGUGac-----------AGCCc -5'
15839 5' -53.4 NC_004065.1 + 99476 0.66 0.989422
Target:  5'- gGACcaGGAGACguGCgagAUGCCGCcGUUGGGg -3'
miRNA:   3'- aUUG--UCUCUG--UG---UGCGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 109216 0.66 0.989422
Target:  5'- -uACGcGGGCcuguuCACGCCGCUGUaccgucCGGGg -3'
miRNA:   3'- auUGUcUCUGu----GUGCGGUGACA------GCCC- -5'
15839 5' -53.4 NC_004065.1 + 43335 0.66 0.989422
Target:  5'- cGGCGGGGACGCcccacGCGCCGC-GUCc-- -3'
miRNA:   3'- aUUGUCUCUGUG-----UGCGGUGaCAGccc -5'
15839 5' -53.4 NC_004065.1 + 27938 0.66 0.989422
Target:  5'- cGACAGAGACGCAgUGCgCACaGUUGu- -3'
miRNA:   3'- aUUGUCUCUGUGU-GCG-GUGaCAGCcc -5'
15839 5' -53.4 NC_004065.1 + 77970 0.66 0.988603
Target:  5'- gAGCcccGAGACGCugGCCGCggcgagccgcccCGGGa -3'
miRNA:   3'- aUUGu--CUCUGUGugCGGUGaca---------GCCC- -5'
15839 5' -53.4 NC_004065.1 + 86577 0.66 0.98803
Target:  5'- -cGCAGAGcgGCACcuCGUCGCaGUCGGa -3'
miRNA:   3'- auUGUCUC--UGUGu-GCGGUGaCAGCCc -5'
15839 5' -53.4 NC_004065.1 + 41503 0.66 0.98803
Target:  5'- gGACGGGGAgCGCGCgggcggucccGCCAgaGUCGcGGc -3'
miRNA:   3'- aUUGUCUCU-GUGUG----------CGGUgaCAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 40902 0.66 0.98803
Target:  5'- -------cGCACGCGCCGgcUUGUCGGGc -3'
miRNA:   3'- auugucucUGUGUGCGGU--GACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 196045 0.66 0.98803
Target:  5'- -uGCAuGAG-CGCGaGCCAUcGUCGGGg -3'
miRNA:   3'- auUGU-CUCuGUGUgCGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 123542 0.66 0.9865
Target:  5'- -uACAGGGugGCcaGCGCCGCguccucgucGUaCGGGu -3'
miRNA:   3'- auUGUCUCugUG--UGCGGUGa--------CA-GCCC- -5'
15839 5' -53.4 NC_004065.1 + 225386 0.66 0.9865
Target:  5'- cGGCGGGGGCGCugGC-GCUGaUGGu -3'
miRNA:   3'- aUUGUCUCUGUGugCGgUGACaGCCc -5'
15839 5' -53.4 NC_004065.1 + 20665 0.66 0.984824
Target:  5'- --uCGGAGuACGCgucuuccaccACGCCGCUGgcacCGGGc -3'
miRNA:   3'- auuGUCUC-UGUG----------UGCGGUGACa---GCCC- -5'
15839 5' -53.4 NC_004065.1 + 115144 0.66 0.984824
Target:  5'- aGGgAGAGGuCAC-CGCCAUcgucGUCGGGc -3'
miRNA:   3'- aUUgUCUCU-GUGuGCGGUGa---CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 202521 0.66 0.984824
Target:  5'- aGACAGAucaGAgGCGCGCUcaaauGCUGggaucCGGGa -3'
miRNA:   3'- aUUGUCU---CUgUGUGCGG-----UGACa----GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.