miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 93200 1.1 0.006793
Target:  5'- gUAACAGAGACACACGCCACUGUCGGGg -3'
miRNA:   3'- -AUUGUCUCUGUGUGCGGUGACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 216841 0.83 0.316761
Target:  5'- -uACAGAGACGgACGCCGCUGUaCGGu -3'
miRNA:   3'- auUGUCUCUGUgUGCGGUGACA-GCCc -5'
15839 5' -53.4 NC_004065.1 + 967 0.78 0.538548
Target:  5'- cUGACAGAGGugauaaauUACACcacggugccuggcaGCCGCUGUCGGGa -3'
miRNA:   3'- -AUUGUCUCU--------GUGUG--------------CGGUGACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 39392 0.76 0.662237
Target:  5'- cGACAGAGAgAUGCGUCGCacgcaaguugGUCGGGg -3'
miRNA:   3'- aUUGUCUCUgUGUGCGGUGa---------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 166392 0.75 0.712277
Target:  5'- gAGCAGGGACA--UGCUGCUgGUCGGGa -3'
miRNA:   3'- aUUGUCUCUGUguGCGGUGA-CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 111922 0.73 0.770014
Target:  5'- cGACgAGAGACGCcauggGCGCCGCcGUCGcGGu -3'
miRNA:   3'- aUUG-UCUCUGUG-----UGCGGUGaCAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 204984 0.73 0.78839
Target:  5'- -uACGuGGGACACACGUCGgaggGUCGGGa -3'
miRNA:   3'- auUGU-CUCUGUGUGCGGUga--CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 33276 0.73 0.806215
Target:  5'- gGGCAGGcGCAgCACGCCGaUGUUGGGg -3'
miRNA:   3'- aUUGUCUcUGU-GUGCGGUgACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 71739 0.73 0.814899
Target:  5'- cGACGGuGACGCgGCGCUACcgGUCGGu -3'
miRNA:   3'- aUUGUCuCUGUG-UGCGGUGa-CAGCCc -5'
15839 5' -53.4 NC_004065.1 + 24551 0.72 0.839944
Target:  5'- cAGCGGAGACGa--GCCcCUcGUCGGGa -3'
miRNA:   3'- aUUGUCUCUGUgugCGGuGA-CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 69188 0.72 0.847932
Target:  5'- cGACGGAGuuCGCACaGUCGCUGUCGa- -3'
miRNA:   3'- aUUGUCUCu-GUGUG-CGGUGACAGCcc -5'
15839 5' -53.4 NC_004065.1 + 102523 0.71 0.866305
Target:  5'- cGGCAGAggacGACGCGCGCCuuguccucgucggugGCgccgggGUCGGGu -3'
miRNA:   3'- aUUGUCU----CUGUGUGCGG---------------UGa-----CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 30978 0.71 0.870716
Target:  5'- cGAguGGGAUGCGCucGCCGC-GUCGGGc -3'
miRNA:   3'- aUUguCUCUGUGUG--CGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 61842 0.71 0.870716
Target:  5'- aAACA-AGGCGuCGCGCCGCUGUCGc- -3'
miRNA:   3'- aUUGUcUCUGU-GUGCGGUGACAGCcc -5'
15839 5' -53.4 NC_004065.1 + 119837 0.71 0.87719
Target:  5'- gGGCGGcGGCGCGucgcggcCGCCGCagagGUCGGGg -3'
miRNA:   3'- aUUGUCuCUGUGU-------GCGGUGa---CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 43629 0.71 0.877898
Target:  5'- gGACGGGG-UGCugGUCGCUGUagaGGGa -3'
miRNA:   3'- aUUGUCUCuGUGugCGGUGACAg--CCC- -5'
15839 5' -53.4 NC_004065.1 + 68167 0.71 0.891613
Target:  5'- -cGCGGcGGCGCGCGCgacggaGCUGUCGGc -3'
miRNA:   3'- auUGUCuCUGUGUGCGg-----UGACAGCCc -5'
15839 5' -53.4 NC_004065.1 + 59853 0.71 0.891613
Target:  5'- uUGACGGAG-CGCACGCacucaucgagCACUgauccuucGUCGGGg -3'
miRNA:   3'- -AUUGUCUCuGUGUGCG----------GUGA--------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 201533 0.7 0.898138
Target:  5'- cGACGGAG-CucCGCGgCGCUGUCGGc -3'
miRNA:   3'- aUUGUCUCuGu-GUGCgGUGACAGCCc -5'
15839 5' -53.4 NC_004065.1 + 199412 0.7 0.898138
Target:  5'- gGAC--GGACACGCGUCGCUGccUCGGa -3'
miRNA:   3'- aUUGucUCUGUGUGCGGUGAC--AGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.