miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 44485 0.67 0.982994
Target:  5'- -cGCAGGGACACGucagccaGCCACUGUa--- -3'
miRNA:   3'- auUGUCUCUGUGUg------CGGUGACAgccc -5'
15839 5' -53.4 NC_004065.1 + 108730 0.67 0.982994
Target:  5'- ---aGGGGGCGCGCGUCGCccucacgCGGGu -3'
miRNA:   3'- auugUCUCUGUGUGCGGUGaca----GCCC- -5'
15839 5' -53.4 NC_004065.1 + 74926 0.67 0.982994
Target:  5'- -cGCAGGGGgaGCugGCCug-GUUGGGa -3'
miRNA:   3'- auUGUCUCUg-UGugCGGugaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 43147 0.67 0.982994
Target:  5'- -cGCGGaAGACACGCGCacggACgg-CGGGa -3'
miRNA:   3'- auUGUC-UCUGUGUGCGg---UGacaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 86362 0.67 0.981003
Target:  5'- gUAGCcGAGGCucuCG-GCCAC-GUCGGGg -3'
miRNA:   3'- -AUUGuCUCUGu--GUgCGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 140787 0.67 0.981003
Target:  5'- aUGACgAGAGAgACGCGaCGCUcaUCGGGa -3'
miRNA:   3'- -AUUG-UCUCUgUGUGCgGUGAc-AGCCC- -5'
15839 5' -53.4 NC_004065.1 + 164483 0.67 0.978842
Target:  5'- cGACAGGGACACAucCGCCGCUc----- -3'
miRNA:   3'- aUUGUCUCUGUGU--GCGGUGAcagccc -5'
15839 5' -53.4 NC_004065.1 + 33591 0.67 0.978842
Target:  5'- gUGGCGGAcGGCAUcacgAUGCUGCUG-CGGGc -3'
miRNA:   3'- -AUUGUCU-CUGUG----UGCGGUGACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 33368 0.67 0.976504
Target:  5'- cGugAGAGACgccGCGCGCUACUGgccccUGGa -3'
miRNA:   3'- aUugUCUCUG---UGUGCGGUGACa----GCCc -5'
15839 5' -53.4 NC_004065.1 + 199442 0.67 0.976504
Target:  5'- gGAC-GAGGCGCuCGCCGCggcGgaaCGGGg -3'
miRNA:   3'- aUUGuCUCUGUGuGCGGUGa--Ca--GCCC- -5'
15839 5' -53.4 NC_004065.1 + 94375 0.67 0.976504
Target:  5'- -cGCAGAGGguCuAgGUCGCUGUCGGc -3'
miRNA:   3'- auUGUCUCUguG-UgCGGUGACAGCCc -5'
15839 5' -53.4 NC_004065.1 + 145298 0.67 0.976504
Target:  5'- cGACGGGGuaACGuCGCCGCU-UCGGGu -3'
miRNA:   3'- aUUGUCUCugUGU-GCGGUGAcAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 52674 0.67 0.976504
Target:  5'- gUGGCGGuGGCGgAUGCgACUGUUGaGGu -3'
miRNA:   3'- -AUUGUCuCUGUgUGCGgUGACAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 169605 0.67 0.97372
Target:  5'- -cGCGGGGGCcguCACGUCGCUuaaccucGUCGGa -3'
miRNA:   3'- auUGUCUCUGu--GUGCGGUGA-------CAGCCc -5'
15839 5' -53.4 NC_004065.1 + 131205 0.67 0.97127
Target:  5'- cGGCGcGAGAUuuuUAUGCCGCagaagucgaUGUCGGGg -3'
miRNA:   3'- aUUGU-CUCUGu--GUGCGGUG---------ACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 139714 0.67 0.97127
Target:  5'- --uCAGGGuaACACGCgGCUGcCGGGc -3'
miRNA:   3'- auuGUCUCugUGUGCGgUGACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 192527 0.67 0.970988
Target:  5'- uUGGCGGAGAgccgccaggggucCGCACaGCC-CUG-CGGGa -3'
miRNA:   3'- -AUUGUCUCU-------------GUGUG-CGGuGACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 130657 0.68 0.96836
Target:  5'- gGACAGucGGCGC-CGUCGCUgccaacgcucGUCGGGc -3'
miRNA:   3'- aUUGUCu-CUGUGuGCGGUGA----------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 149543 0.68 0.965246
Target:  5'- --cCAGAGACGCgacagGCGCUcguccgacucgcGCUcGUCGGGu -3'
miRNA:   3'- auuGUCUCUGUG-----UGCGG------------UGA-CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 32896 0.68 0.965246
Target:  5'- ----cGAGAUGC-CGUC-CUGUCGGGg -3'
miRNA:   3'- auuguCUCUGUGuGCGGuGACAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.