Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15839 | 5' | -53.4 | NC_004065.1 | + | 32896 | 0.68 | 0.965246 |
Target: 5'- ----cGAGAUGC-CGUC-CUGUCGGGg -3' miRNA: 3'- auuguCUCUGUGuGCGGuGACAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 19436 | 0.68 | 0.963942 |
Target: 5'- --cCGGAGGCAcCGCGCUGCUGgcgaugagcguggUGGGg -3' miRNA: 3'- auuGUCUCUGU-GUGCGGUGACa------------GCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 104376 | 0.68 | 0.961923 |
Target: 5'- gAGCAcauGGCACACGCCACg--CGGcGg -3' miRNA: 3'- aUUGUcu-CUGUGUGCGGUGacaGCC-C- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 135892 | 0.68 | 0.958386 |
Target: 5'- -cGCGcAGGCACGCGUCGC-GUCuGGGa -3' miRNA: 3'- auUGUcUCUGUGUGCGGUGaCAG-CCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 24831 | 0.69 | 0.950651 |
Target: 5'- gUggUGGAGACGCACGCgGCgcccgaUGUUGGcGg -3' miRNA: 3'- -AuuGUCUCUGUGUGCGgUG------ACAGCC-C- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 66722 | 0.69 | 0.946446 |
Target: 5'- ---aAGAGGCugGCGCCcguGCcGUCGGa -3' miRNA: 3'- auugUCUCUGugUGCGG---UGaCAGCCc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 45207 | 0.69 | 0.946446 |
Target: 5'- cAACGGAGACuacGCugGCC-CUccCGGGa -3' miRNA: 3'- aUUGUCUCUG---UGugCGGuGAcaGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 27764 | 0.69 | 0.946446 |
Target: 5'- -cGCAucGAGACGCuGCGCCGCcGUCuGGa -3' miRNA: 3'- auUGU--CUCUGUG-UGCGGUGaCAGcCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 188419 | 0.69 | 0.946446 |
Target: 5'- aGACAaaaacGGGCACACGUCAgaGcCGGGg -3' miRNA: 3'- aUUGUc----UCUGUGUGCGGUgaCaGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 109781 | 0.69 | 0.946446 |
Target: 5'- cAGCAG-GGCAgGCGCUACgccgCGGGc -3' miRNA: 3'- aUUGUCuCUGUgUGCGGUGaca-GCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 138239 | 0.69 | 0.942011 |
Target: 5'- ----cGAGGCGCuCGCCGCcGUCGaGGa -3' miRNA: 3'- auuguCUCUGUGuGCGGUGaCAGC-CC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 177482 | 0.69 | 0.942011 |
Target: 5'- cGGCGGGGGCGCACGgCgggGCcGcCGGGg -3' miRNA: 3'- aUUGUCUCUGUGUGCgG---UGaCaGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 45191 | 0.69 | 0.937344 |
Target: 5'- cGACAGGGGCaACACGCCgccGCUGcCGc- -3' miRNA: 3'- aUUGUCUCUG-UGUGCGG---UGACaGCcc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 193863 | 0.69 | 0.932445 |
Target: 5'- gAGCGGcuGACACAgCGCCGCUGgacuagcgaUCGGa -3' miRNA: 3'- aUUGUCu-CUGUGU-GCGGUGAC---------AGCCc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 60561 | 0.69 | 0.932445 |
Target: 5'- cGACGGAGACGCcgggucCGCaCACgg-CGGGg -3' miRNA: 3'- aUUGUCUCUGUGu-----GCG-GUGacaGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 90955 | 0.7 | 0.927311 |
Target: 5'- aGACGGgccAGACggGCACGCUGCgGUCGGa -3' miRNA: 3'- aUUGUC---UCUG--UGUGCGGUGaCAGCCc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 45800 | 0.7 | 0.927311 |
Target: 5'- --uCGGGGGCugGCGCCACacgccgcgUG-CGGGu -3' miRNA: 3'- auuGUCUCUGugUGCGGUG--------ACaGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 162895 | 0.7 | 0.927311 |
Target: 5'- -cGCGuccAGGCGCGCGCCGCUGUCc-- -3' miRNA: 3'- auUGUc--UCUGUGUGCGGUGACAGccc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 190607 | 0.7 | 0.921942 |
Target: 5'- aGACuGGGGAUAUAUGCC-C-GUCGGGg -3' miRNA: 3'- aUUG-UCUCUGUGUGCGGuGaCAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 30086 | 0.7 | 0.91634 |
Target: 5'- gUGGCGGAG-CGCGCGCUGaugUGUCaGGGa -3' miRNA: 3'- -AUUGUCUCuGUGUGCGGUg--ACAG-CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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