miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 488 0.66 0.990685
Target:  5'- ----cGGGcCGCGCGCCGCguccgCGGGa -3'
miRNA:   3'- auuguCUCuGUGUGCGGUGaca--GCCC- -5'
15839 5' -53.4 NC_004065.1 + 967 0.78 0.538548
Target:  5'- cUGACAGAGGugauaaauUACACcacggugccuggcaGCCGCUGUCGGGa -3'
miRNA:   3'- -AUUGUCUCU--------GUGUG--------------CGGUGACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 19436 0.68 0.963942
Target:  5'- --cCGGAGGCAcCGCGCUGCUGgcgaugagcguggUGGGg -3'
miRNA:   3'- auuGUCUCUGU-GUGCGGUGACa------------GCCC- -5'
15839 5' -53.4 NC_004065.1 + 20665 0.66 0.984824
Target:  5'- --uCGGAGuACGCgucuuccaccACGCCGCUGgcacCGGGc -3'
miRNA:   3'- auuGUCUC-UGUG----------UGCGGUGACa---GCCC- -5'
15839 5' -53.4 NC_004065.1 + 24551 0.72 0.839944
Target:  5'- cAGCGGAGACGa--GCCcCUcGUCGGGa -3'
miRNA:   3'- aUUGUCUCUGUgugCGGuGA-CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 24831 0.69 0.950651
Target:  5'- gUggUGGAGACGCACGCgGCgcccgaUGUUGGcGg -3'
miRNA:   3'- -AuuGUCUCUGUGUGCGgUG------ACAGCC-C- -5'
15839 5' -53.4 NC_004065.1 + 27764 0.69 0.946446
Target:  5'- -cGCAucGAGACGCuGCGCCGCcGUCuGGa -3'
miRNA:   3'- auUGU--CUCUGUG-UGCGGUGaCAGcCC- -5'
15839 5' -53.4 NC_004065.1 + 27938 0.66 0.989422
Target:  5'- cGACAGAGACGCAgUGCgCACaGUUGu- -3'
miRNA:   3'- aUUGUCUCUGUGU-GCG-GUGaCAGCcc -5'
15839 5' -53.4 NC_004065.1 + 30086 0.7 0.91634
Target:  5'- gUGGCGGAG-CGCGCGCUGaugUGUCaGGGa -3'
miRNA:   3'- -AUUGUCUCuGUGUGCGGUg--ACAG-CCC- -5'
15839 5' -53.4 NC_004065.1 + 30978 0.71 0.870716
Target:  5'- cGAguGGGAUGCGCucGCCGC-GUCGGGc -3'
miRNA:   3'- aUUguCUCUGUGUG--CGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 32896 0.68 0.965246
Target:  5'- ----cGAGAUGC-CGUC-CUGUCGGGg -3'
miRNA:   3'- auuguCUCUGUGuGCGGuGACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 33276 0.73 0.806215
Target:  5'- gGGCAGGcGCAgCACGCCGaUGUUGGGg -3'
miRNA:   3'- aUUGUCUcUGU-GUGCGGUgACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 33368 0.67 0.976504
Target:  5'- cGugAGAGACgccGCGCGCUACUGgccccUGGa -3'
miRNA:   3'- aUugUCUCUG---UGUGCGGUGACa----GCCc -5'
15839 5' -53.4 NC_004065.1 + 33591 0.67 0.978842
Target:  5'- gUGGCGGAcGGCAUcacgAUGCUGCUG-CGGGc -3'
miRNA:   3'- -AUUGUCU-CUGUG----UGCGGUGACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 39392 0.76 0.662237
Target:  5'- cGACAGAGAgAUGCGUCGCacgcaaguugGUCGGGg -3'
miRNA:   3'- aUUGUCUCUgUGUGCGGUGa---------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 40902 0.66 0.98803
Target:  5'- -------cGCACGCGCCGgcUUGUCGGGc -3'
miRNA:   3'- auugucucUGUGUGCGGU--GACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 41503 0.66 0.98803
Target:  5'- gGACGGGGAgCGCGCgggcggucccGCCAgaGUCGcGGc -3'
miRNA:   3'- aUUGUCUCU-GUGUG----------CGGUgaCAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 43147 0.67 0.982994
Target:  5'- -cGCGGaAGACACGCGCacggACgg-CGGGa -3'
miRNA:   3'- auUGUC-UCUGUGUGCGg---UGacaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 43335 0.66 0.989422
Target:  5'- cGGCGGGGACGCcccacGCGCCGC-GUCc-- -3'
miRNA:   3'- aUUGUCUCUGUG-----UGCGGUGaCAGccc -5'
15839 5' -53.4 NC_004065.1 + 43629 0.71 0.877898
Target:  5'- gGACGGGG-UGCugGUCGCUGUagaGGGa -3'
miRNA:   3'- aUUGUCUCuGUGugCGGUGACAg--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.