miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 44485 0.67 0.982994
Target:  5'- -cGCAGGGACACGucagccaGCCACUGUa--- -3'
miRNA:   3'- auUGUCUCUGUGUg------CGGUGACAgccc -5'
15839 5' -53.4 NC_004065.1 + 45191 0.69 0.937344
Target:  5'- cGACAGGGGCaACACGCCgccGCUGcCGc- -3'
miRNA:   3'- aUUGUCUCUG-UGUGCGG---UGACaGCcc -5'
15839 5' -53.4 NC_004065.1 + 45207 0.69 0.946446
Target:  5'- cAACGGAGACuacGCugGCC-CUccCGGGa -3'
miRNA:   3'- aUUGUCUCUG---UGugCGGuGAcaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 45800 0.7 0.927311
Target:  5'- --uCGGGGGCugGCGCCACacgccgcgUG-CGGGu -3'
miRNA:   3'- auuGUCUCUGugUGCGGUG--------ACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 51800 0.66 0.990685
Target:  5'- aGGCAguggauGAGACACGCGCC-CgcaUGGGg -3'
miRNA:   3'- aUUGU------CUCUGUGUGCGGuGacaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 52674 0.67 0.976504
Target:  5'- gUGGCGGuGGCGgAUGCgACUGUUGaGGu -3'
miRNA:   3'- -AUUGUCuCUGUgUGCGgUGACAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 53780 0.7 0.910503
Target:  5'- gGACGGAGGCGUAaaCCAC-GUCGGGa -3'
miRNA:   3'- aUUGUCUCUGUGUgcGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 59853 0.71 0.891613
Target:  5'- uUGACGGAG-CGCACGCacucaucgagCACUgauccuucGUCGGGg -3'
miRNA:   3'- -AUUGUCUCuGUGUGCG----------GUGA--------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 60561 0.69 0.932445
Target:  5'- cGACGGAGACGCcgggucCGCaCACgg-CGGGg -3'
miRNA:   3'- aUUGUCUCUGUGu-----GCG-GUGacaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 60779 0.7 0.910503
Target:  5'- cUGACGGAGAa--AUGCCGCUGUCa-- -3'
miRNA:   3'- -AUUGUCUCUgugUGCGGUGACAGccc -5'
15839 5' -53.4 NC_004065.1 + 61842 0.71 0.870716
Target:  5'- aAACA-AGGCGuCGCGCCGCUGUCGc- -3'
miRNA:   3'- aUUGUcUCUGU-GUGCGGUGACAGCcc -5'
15839 5' -53.4 NC_004065.1 + 66118 0.68 0.965246
Target:  5'- cGACAucaccGAGGCGCugGCgCGCUGggccgCGGa -3'
miRNA:   3'- aUUGU-----CUCUGUGugCG-GUGACa----GCCc -5'
15839 5' -53.4 NC_004065.1 + 66722 0.69 0.946446
Target:  5'- ---aAGAGGCugGCGCCcguGCcGUCGGa -3'
miRNA:   3'- auugUCUCUGugUGCGG---UGaCAGCCc -5'
15839 5' -53.4 NC_004065.1 + 68167 0.71 0.891613
Target:  5'- -cGCGGcGGCGCGCGCgacggaGCUGUCGGc -3'
miRNA:   3'- auUGUCuCUGUGUGCGg-----UGACAGCCc -5'
15839 5' -53.4 NC_004065.1 + 69188 0.72 0.847932
Target:  5'- cGACGGAGuuCGCACaGUCGCUGUCGa- -3'
miRNA:   3'- aUUGUCUCu-GUGUG-CGGUGACAGCcc -5'
15839 5' -53.4 NC_004065.1 + 71739 0.73 0.814899
Target:  5'- cGACGGuGACGCgGCGCUACcgGUCGGu -3'
miRNA:   3'- aUUGUCuCUGUG-UGCGGUGa-CAGCCc -5'
15839 5' -53.4 NC_004065.1 + 74926 0.67 0.982994
Target:  5'- -cGCAGGGGgaGCugGCCug-GUUGGGa -3'
miRNA:   3'- auUGUCUCUg-UGugCGGugaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 77970 0.66 0.988603
Target:  5'- gAGCcccGAGACGCugGCCGCggcgagccgcccCGGGa -3'
miRNA:   3'- aUUGu--CUCUGUGugCGGUGaca---------GCCC- -5'
15839 5' -53.4 NC_004065.1 + 78060 0.66 0.990685
Target:  5'- cGGCGG-GGCGCACGaacCUGUCGaGGu -3'
miRNA:   3'- aUUGUCuCUGUGUGCgguGACAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 86362 0.67 0.981003
Target:  5'- gUAGCcGAGGCucuCG-GCCAC-GUCGGGg -3'
miRNA:   3'- -AUUGuCUCUGu--GUgCGGUGaCAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.