miRNA display CGI


Results 41 - 60 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 86577 0.66 0.98803
Target:  5'- -cGCAGAGcgGCACcuCGUCGCaGUCGGa -3'
miRNA:   3'- auUGUCUC--UGUGu-GCGGUGaCAGCCc -5'
15839 5' -53.4 NC_004065.1 + 90955 0.7 0.927311
Target:  5'- aGACGGgccAGACggGCACGCUGCgGUCGGa -3'
miRNA:   3'- aUUGUC---UCUG--UGUGCGGUGaCAGCCc -5'
15839 5' -53.4 NC_004065.1 + 93200 1.1 0.006793
Target:  5'- gUAACAGAGACACACGCCACUGUCGGGg -3'
miRNA:   3'- -AUUGUCUCUGUGUGCGGUGACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 94375 0.67 0.976504
Target:  5'- -cGCAGAGGguCuAgGUCGCUGUCGGc -3'
miRNA:   3'- auUGUCUCUguG-UgCGGUGACAGCCc -5'
15839 5' -53.4 NC_004065.1 + 99476 0.66 0.989422
Target:  5'- gGACcaGGAGACguGCgagAUGCCGCcGUUGGGg -3'
miRNA:   3'- aUUG--UCUCUG--UG---UGCGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 102523 0.71 0.866305
Target:  5'- cGGCAGAggacGACGCGCGCCuuguccucgucggugGCgccgggGUCGGGu -3'
miRNA:   3'- aUUGUCU----CUGUGUGCGG---------------UGa-----CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 104376 0.68 0.961923
Target:  5'- gAGCAcauGGCACACGCCACg--CGGcGg -3'
miRNA:   3'- aUUGUcu-CUGUGUGCGGUGacaGCC-C- -5'
15839 5' -53.4 NC_004065.1 + 108730 0.67 0.982994
Target:  5'- ---aGGGGGCGCGCGUCGCccucacgCGGGu -3'
miRNA:   3'- auugUCUCUGUGUGCGGUGaca----GCCC- -5'
15839 5' -53.4 NC_004065.1 + 109216 0.66 0.989422
Target:  5'- -uACGcGGGCcuguuCACGCCGCUGUaccgucCGGGg -3'
miRNA:   3'- auUGUcUCUGu----GUGCGGUGACA------GCCC- -5'
15839 5' -53.4 NC_004065.1 + 109781 0.69 0.946446
Target:  5'- cAGCAG-GGCAgGCGCUACgccgCGGGc -3'
miRNA:   3'- aUUGUCuCUGUgUGCGGUGaca-GCCC- -5'
15839 5' -53.4 NC_004065.1 + 111922 0.73 0.770014
Target:  5'- cGACgAGAGACGCcauggGCGCCGCcGUCGcGGu -3'
miRNA:   3'- aUUG-UCUCUGUG-----UGCGGUGaCAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 115144 0.66 0.984824
Target:  5'- aGGgAGAGGuCAC-CGCCAUcgucGUCGGGc -3'
miRNA:   3'- aUUgUCUCU-GUGuGCGGUGa---CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 119837 0.71 0.87719
Target:  5'- gGGCGGcGGCGCGucgcggcCGCCGCagagGUCGGGg -3'
miRNA:   3'- aUUGUCuCUGUGU-------GCGGUGa---CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 123542 0.66 0.9865
Target:  5'- -uACAGGGugGCcaGCGCCGCguccucgucGUaCGGGu -3'
miRNA:   3'- auUGUCUCugUG--UGCGGUGa--------CA-GCCC- -5'
15839 5' -53.4 NC_004065.1 + 130657 0.68 0.96836
Target:  5'- gGACAGucGGCGC-CGUCGCUgccaacgcucGUCGGGc -3'
miRNA:   3'- aUUGUCu-CUGUGuGCGGUGA----------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 131205 0.67 0.97127
Target:  5'- cGGCGcGAGAUuuuUAUGCCGCagaagucgaUGUCGGGg -3'
miRNA:   3'- aUUGU-CUCUGu--GUGCGGUG---------ACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 135892 0.68 0.958386
Target:  5'- -cGCGcAGGCACGCGUCGC-GUCuGGGa -3'
miRNA:   3'- auUGUcUCUGUGUGCGGUGaCAG-CCC- -5'
15839 5' -53.4 NC_004065.1 + 138239 0.69 0.942011
Target:  5'- ----cGAGGCGCuCGCCGCcGUCGaGGa -3'
miRNA:   3'- auuguCUCUGUGuGCGGUGaCAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 139714 0.67 0.97127
Target:  5'- --uCAGGGuaACACGCgGCUGcCGGGc -3'
miRNA:   3'- auuGUCUCugUGUGCGgUGACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 140787 0.67 0.981003
Target:  5'- aUGACgAGAGAgACGCGaCGCUcaUCGGGa -3'
miRNA:   3'- -AUUG-UCUCUgUGUGCgGUGAc-AGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.