Results 61 - 80 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15839 | 5' | -53.4 | NC_004065.1 | + | 145298 | 0.67 | 0.976504 |
Target: 5'- cGACGGGGuaACGuCGCCGCU-UCGGGu -3' miRNA: 3'- aUUGUCUCugUGU-GCGGUGAcAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 149543 | 0.68 | 0.965246 |
Target: 5'- --cCAGAGACGCgacagGCGCUcguccgacucgcGCUcGUCGGGu -3' miRNA: 3'- auuGUCUCUGUG-----UGCGG------------UGA-CAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 162895 | 0.7 | 0.927311 |
Target: 5'- -cGCGuccAGGCGCGCGCCGCUGUCc-- -3' miRNA: 3'- auUGUc--UCUGUGUGCGGUGACAGccc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 164483 | 0.67 | 0.978842 |
Target: 5'- cGACAGGGACACAucCGCCGCUc----- -3' miRNA: 3'- aUUGUCUCUGUGU--GCGGUGAcagccc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 165738 | 0.66 | 0.989942 |
Target: 5'- ----cGAGACGCGCGCCGCgccuuccaggaacUCGGa -3' miRNA: 3'- auuguCUCUGUGUGCGGUGac-----------AGCCc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 166392 | 0.75 | 0.712277 |
Target: 5'- gAGCAGGGACA--UGCUGCUgGUCGGGa -3' miRNA: 3'- aUUGUCUCUGUguGCGGUGA-CAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 169605 | 0.67 | 0.97372 |
Target: 5'- -cGCGGGGGCcguCACGUCGCUuaaccucGUCGGa -3' miRNA: 3'- auUGUCUCUGu--GUGCGGUGA-------CAGCCc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 170610 | 0.7 | 0.910503 |
Target: 5'- --uCGGAGACAUugGCCGgcGUCaGGGa -3' miRNA: 3'- auuGUCUCUGUGugCGGUgaCAG-CCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 173901 | 0.66 | 0.990685 |
Target: 5'- -uGCAGaAGGCGaGCGCCGCcGUcgucCGGGa -3' miRNA: 3'- auUGUC-UCUGUgUGCGGUGaCA----GCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 177482 | 0.69 | 0.942011 |
Target: 5'- cGGCGGGGGCGCACGgCgggGCcGcCGGGg -3' miRNA: 3'- aUUGUCUCUGUGUGCgG---UGaCaGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 188419 | 0.69 | 0.946446 |
Target: 5'- aGACAaaaacGGGCACACGUCAgaGcCGGGg -3' miRNA: 3'- aUUGUc----UCUGUGUGCGGUgaCaGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 190607 | 0.7 | 0.921942 |
Target: 5'- aGACuGGGGAUAUAUGCC-C-GUCGGGg -3' miRNA: 3'- aUUG-UCUCUGUGUGCGGuGaCAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 192527 | 0.67 | 0.970988 |
Target: 5'- uUGGCGGAGAgccgccaggggucCGCACaGCC-CUG-CGGGa -3' miRNA: 3'- -AUUGUCUCU-------------GUGUG-CGGuGACaGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 192648 | 0.7 | 0.910503 |
Target: 5'- cGAUAGuGGCACgguaauGCGUCGC-GUCGGGg -3' miRNA: 3'- aUUGUCuCUGUG------UGCGGUGaCAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 193863 | 0.69 | 0.932445 |
Target: 5'- gAGCGGcuGACACAgCGCCGCUGgacuagcgaUCGGa -3' miRNA: 3'- aUUGUCu-CUGUGU-GCGGUGAC---------AGCCc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 196045 | 0.66 | 0.98803 |
Target: 5'- -uGCAuGAG-CGCGaGCCAUcGUCGGGg -3' miRNA: 3'- auUGU-CUCuGUGUgCGGUGaCAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 197455 | 0.66 | 0.990685 |
Target: 5'- ---uGGAGAUGauaAUGCCGCUGgUGGGg -3' miRNA: 3'- auugUCUCUGUg--UGCGGUGACaGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 199412 | 0.7 | 0.898138 |
Target: 5'- gGAC--GGACACGCGUCGCUGccUCGGa -3' miRNA: 3'- aUUGucUCUGUGUGCGGUGAC--AGCCc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 199442 | 0.67 | 0.976504 |
Target: 5'- gGAC-GAGGCGCuCGCCGCggcGgaaCGGGg -3' miRNA: 3'- aUUGuCUCUGUGuGCGGUGa--Ca--GCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 201533 | 0.7 | 0.898138 |
Target: 5'- cGACGGAG-CucCGCGgCGCUGUCGGc -3' miRNA: 3'- aUUGUCUCuGu-GUGCgGUGACAGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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