miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 225386 0.66 0.9865
Target:  5'- cGGCGGGGGCGCugGC-GCUGaUGGu -3'
miRNA:   3'- aUUGUCUCUGUGugCGgUGACaGCCc -5'
15839 5' -53.4 NC_004065.1 + 216841 0.83 0.316761
Target:  5'- -uACAGAGACGgACGCCGCUGUaCGGu -3'
miRNA:   3'- auUGUCUCUGUgUGCGGUGACA-GCCc -5'
15839 5' -53.4 NC_004065.1 + 204984 0.73 0.78839
Target:  5'- -uACGuGGGACACACGUCGgaggGUCGGGa -3'
miRNA:   3'- auUGU-CUCUGUGUGCGGUga--CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 202521 0.66 0.984824
Target:  5'- aGACAGAucaGAgGCGCGCUcaaauGCUGggaucCGGGa -3'
miRNA:   3'- aUUGUCU---CUgUGUGCGG-----UGACa----GCCC- -5'
15839 5' -53.4 NC_004065.1 + 201533 0.7 0.898138
Target:  5'- cGACGGAG-CucCGCGgCGCUGUCGGc -3'
miRNA:   3'- aUUGUCUCuGu-GUGCgGUGACAGCCc -5'
15839 5' -53.4 NC_004065.1 + 199442 0.67 0.976504
Target:  5'- gGAC-GAGGCGCuCGCCGCggcGgaaCGGGg -3'
miRNA:   3'- aUUGuCUCUGUGuGCGGUGa--Ca--GCCC- -5'
15839 5' -53.4 NC_004065.1 + 199412 0.7 0.898138
Target:  5'- gGAC--GGACACGCGUCGCUGccUCGGa -3'
miRNA:   3'- aUUGucUCUGUGUGCGGUGAC--AGCCc -5'
15839 5' -53.4 NC_004065.1 + 197455 0.66 0.990685
Target:  5'- ---uGGAGAUGauaAUGCCGCUGgUGGGg -3'
miRNA:   3'- auugUCUCUGUg--UGCGGUGACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 196045 0.66 0.98803
Target:  5'- -uGCAuGAG-CGCGaGCCAUcGUCGGGg -3'
miRNA:   3'- auUGU-CUCuGUGUgCGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 193863 0.69 0.932445
Target:  5'- gAGCGGcuGACACAgCGCCGCUGgacuagcgaUCGGa -3'
miRNA:   3'- aUUGUCu-CUGUGU-GCGGUGAC---------AGCCc -5'
15839 5' -53.4 NC_004065.1 + 192648 0.7 0.910503
Target:  5'- cGAUAGuGGCACgguaauGCGUCGC-GUCGGGg -3'
miRNA:   3'- aUUGUCuCUGUG------UGCGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 192527 0.67 0.970988
Target:  5'- uUGGCGGAGAgccgccaggggucCGCACaGCC-CUG-CGGGa -3'
miRNA:   3'- -AUUGUCUCU-------------GUGUG-CGGuGACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 190607 0.7 0.921942
Target:  5'- aGACuGGGGAUAUAUGCC-C-GUCGGGg -3'
miRNA:   3'- aUUG-UCUCUGUGUGCGGuGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 188419 0.69 0.946446
Target:  5'- aGACAaaaacGGGCACACGUCAgaGcCGGGg -3'
miRNA:   3'- aUUGUc----UCUGUGUGCGGUgaCaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 177482 0.69 0.942011
Target:  5'- cGGCGGGGGCGCACGgCgggGCcGcCGGGg -3'
miRNA:   3'- aUUGUCUCUGUGUGCgG---UGaCaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 173901 0.66 0.990685
Target:  5'- -uGCAGaAGGCGaGCGCCGCcGUcgucCGGGa -3'
miRNA:   3'- auUGUC-UCUGUgUGCGGUGaCA----GCCC- -5'
15839 5' -53.4 NC_004065.1 + 170610 0.7 0.910503
Target:  5'- --uCGGAGACAUugGCCGgcGUCaGGGa -3'
miRNA:   3'- auuGUCUCUGUGugCGGUgaCAG-CCC- -5'
15839 5' -53.4 NC_004065.1 + 169605 0.67 0.97372
Target:  5'- -cGCGGGGGCcguCACGUCGCUuaaccucGUCGGa -3'
miRNA:   3'- auUGUCUCUGu--GUGCGGUGA-------CAGCCc -5'
15839 5' -53.4 NC_004065.1 + 166392 0.75 0.712277
Target:  5'- gAGCAGGGACA--UGCUGCUgGUCGGGa -3'
miRNA:   3'- aUUGUCUCUGUguGCGGUGA-CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 165738 0.66 0.989942
Target:  5'- ----cGAGACGCGCGCCGCgccuuccaggaacUCGGa -3'
miRNA:   3'- auuguCUCUGUGUGCGGUGac-----------AGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.