Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15839 | 5' | -53.4 | NC_004065.1 | + | 164483 | 0.67 | 0.978842 |
Target: 5'- cGACAGGGACACAucCGCCGCUc----- -3' miRNA: 3'- aUUGUCUCUGUGU--GCGGUGAcagccc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 162895 | 0.7 | 0.927311 |
Target: 5'- -cGCGuccAGGCGCGCGCCGCUGUCc-- -3' miRNA: 3'- auUGUc--UCUGUGUGCGGUGACAGccc -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 149543 | 0.68 | 0.965246 |
Target: 5'- --cCAGAGACGCgacagGCGCUcguccgacucgcGCUcGUCGGGu -3' miRNA: 3'- auuGUCUCUGUG-----UGCGG------------UGA-CAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 145298 | 0.67 | 0.976504 |
Target: 5'- cGACGGGGuaACGuCGCCGCU-UCGGGu -3' miRNA: 3'- aUUGUCUCugUGU-GCGGUGAcAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 140787 | 0.67 | 0.981003 |
Target: 5'- aUGACgAGAGAgACGCGaCGCUcaUCGGGa -3' miRNA: 3'- -AUUG-UCUCUgUGUGCgGUGAc-AGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 139714 | 0.67 | 0.97127 |
Target: 5'- --uCAGGGuaACACGCgGCUGcCGGGc -3' miRNA: 3'- auuGUCUCugUGUGCGgUGACaGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 138239 | 0.69 | 0.942011 |
Target: 5'- ----cGAGGCGCuCGCCGCcGUCGaGGa -3' miRNA: 3'- auuguCUCUGUGuGCGGUGaCAGC-CC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 135892 | 0.68 | 0.958386 |
Target: 5'- -cGCGcAGGCACGCGUCGC-GUCuGGGa -3' miRNA: 3'- auUGUcUCUGUGUGCGGUGaCAG-CCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 131205 | 0.67 | 0.97127 |
Target: 5'- cGGCGcGAGAUuuuUAUGCCGCagaagucgaUGUCGGGg -3' miRNA: 3'- aUUGU-CUCUGu--GUGCGGUG---------ACAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 130657 | 0.68 | 0.96836 |
Target: 5'- gGACAGucGGCGC-CGUCGCUgccaacgcucGUCGGGc -3' miRNA: 3'- aUUGUCu-CUGUGuGCGGUGA----------CAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 123542 | 0.66 | 0.9865 |
Target: 5'- -uACAGGGugGCcaGCGCCGCguccucgucGUaCGGGu -3' miRNA: 3'- auUGUCUCugUG--UGCGGUGa--------CA-GCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 119837 | 0.71 | 0.87719 |
Target: 5'- gGGCGGcGGCGCGucgcggcCGCCGCagagGUCGGGg -3' miRNA: 3'- aUUGUCuCUGUGU-------GCGGUGa---CAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 115144 | 0.66 | 0.984824 |
Target: 5'- aGGgAGAGGuCAC-CGCCAUcgucGUCGGGc -3' miRNA: 3'- aUUgUCUCU-GUGuGCGGUGa---CAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 111922 | 0.73 | 0.770014 |
Target: 5'- cGACgAGAGACGCcauggGCGCCGCcGUCGcGGu -3' miRNA: 3'- aUUG-UCUCUGUG-----UGCGGUGaCAGC-CC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 109781 | 0.69 | 0.946446 |
Target: 5'- cAGCAG-GGCAgGCGCUACgccgCGGGc -3' miRNA: 3'- aUUGUCuCUGUgUGCGGUGaca-GCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 109216 | 0.66 | 0.989422 |
Target: 5'- -uACGcGGGCcuguuCACGCCGCUGUaccgucCGGGg -3' miRNA: 3'- auUGUcUCUGu----GUGCGGUGACA------GCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 108730 | 0.67 | 0.982994 |
Target: 5'- ---aGGGGGCGCGCGUCGCccucacgCGGGu -3' miRNA: 3'- auugUCUCUGUGUGCGGUGaca----GCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 104376 | 0.68 | 0.961923 |
Target: 5'- gAGCAcauGGCACACGCCACg--CGGcGg -3' miRNA: 3'- aUUGUcu-CUGUGUGCGGUGacaGCC-C- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 102523 | 0.71 | 0.866305 |
Target: 5'- cGGCAGAggacGACGCGCGCCuuguccucgucggugGCgccgggGUCGGGu -3' miRNA: 3'- aUUGUCU----CUGUGUGCGG---------------UGa-----CAGCCC- -5' |
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15839 | 5' | -53.4 | NC_004065.1 | + | 99476 | 0.66 | 0.989422 |
Target: 5'- gGACcaGGAGACguGCgagAUGCCGCcGUUGGGg -3' miRNA: 3'- aUUG--UCUCUG--UG---UGCGGUGaCAGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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