miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 188419 0.69 0.946446
Target:  5'- aGACAaaaacGGGCACACGUCAgaGcCGGGg -3'
miRNA:   3'- aUUGUc----UCUGUGUGCGGUgaCaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 53780 0.7 0.910503
Target:  5'- gGACGGAGGCGUAaaCCAC-GUCGGGa -3'
miRNA:   3'- aUUGUCUCUGUGUgcGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 170610 0.7 0.910503
Target:  5'- --uCGGAGACAUugGCCGgcGUCaGGGa -3'
miRNA:   3'- auuGUCUCUGUGugCGGUgaCAG-CCC- -5'
15839 5' -53.4 NC_004065.1 + 45800 0.7 0.927311
Target:  5'- --uCGGGGGCugGCGCCACacgccgcgUG-CGGGu -3'
miRNA:   3'- auuGUCUCUGugUGCGGUG--------ACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 193863 0.69 0.932445
Target:  5'- gAGCGGcuGACACAgCGCCGCUGgacuagcgaUCGGa -3'
miRNA:   3'- aUUGUCu-CUGUGU-GCGGUGAC---------AGCCc -5'
15839 5' -53.4 NC_004065.1 + 60561 0.69 0.932445
Target:  5'- cGACGGAGACGCcgggucCGCaCACgg-CGGGg -3'
miRNA:   3'- aUUGUCUCUGUGu-----GCG-GUGacaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 45191 0.69 0.937344
Target:  5'- cGACAGGGGCaACACGCCgccGCUGcCGc- -3'
miRNA:   3'- aUUGUCUCUG-UGUGCGG---UGACaGCcc -5'
15839 5' -53.4 NC_004065.1 + 138239 0.69 0.942011
Target:  5'- ----cGAGGCGCuCGCCGCcGUCGaGGa -3'
miRNA:   3'- auuguCUCUGUGuGCGGUGaCAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 109781 0.69 0.946446
Target:  5'- cAGCAG-GGCAgGCGCUACgccgCGGGc -3'
miRNA:   3'- aUUGUCuCUGUgUGCGGUGaca-GCCC- -5'
15839 5' -53.4 NC_004065.1 + 201533 0.7 0.898138
Target:  5'- cGACGGAG-CucCGCGgCGCUGUCGGc -3'
miRNA:   3'- aUUGUCUCuGu-GUGCgGUGACAGCCc -5'
15839 5' -53.4 NC_004065.1 + 68167 0.71 0.891613
Target:  5'- -cGCGGcGGCGCGCGCgacggaGCUGUCGGc -3'
miRNA:   3'- auUGUCuCUGUGUGCGg-----UGACAGCCc -5'
15839 5' -53.4 NC_004065.1 + 59853 0.71 0.891613
Target:  5'- uUGACGGAG-CGCACGCacucaucgagCACUgauccuucGUCGGGg -3'
miRNA:   3'- -AUUGUCUCuGUGUGCG----------GUGA--------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 967 0.78 0.538548
Target:  5'- cUGACAGAGGugauaaauUACACcacggugccuggcaGCCGCUGUCGGGa -3'
miRNA:   3'- -AUUGUCUCU--------GUGUG--------------CGGUGACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 166392 0.75 0.712277
Target:  5'- gAGCAGGGACA--UGCUGCUgGUCGGGa -3'
miRNA:   3'- aUUGUCUCUGUguGCGGUGA-CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 33276 0.73 0.806215
Target:  5'- gGGCAGGcGCAgCACGCCGaUGUUGGGg -3'
miRNA:   3'- aUUGUCUcUGU-GUGCGGUgACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 71739 0.73 0.814899
Target:  5'- cGACGGuGACGCgGCGCUACcgGUCGGu -3'
miRNA:   3'- aUUGUCuCUGUG-UGCGGUGa-CAGCCc -5'
15839 5' -53.4 NC_004065.1 + 24551 0.72 0.839944
Target:  5'- cAGCGGAGACGa--GCCcCUcGUCGGGa -3'
miRNA:   3'- aUUGUCUCUGUgugCGGuGA-CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 69188 0.72 0.847932
Target:  5'- cGACGGAGuuCGCACaGUCGCUGUCGa- -3'
miRNA:   3'- aUUGUCUCu-GUGUG-CGGUGACAGCcc -5'
15839 5' -53.4 NC_004065.1 + 61842 0.71 0.870716
Target:  5'- aAACA-AGGCGuCGCGCCGCUGUCGc- -3'
miRNA:   3'- aUUGUcUCUGU-GUGCGGUGACAGCcc -5'
15839 5' -53.4 NC_004065.1 + 30978 0.71 0.870716
Target:  5'- cGAguGGGAUGCGCucGCCGC-GUCGGGc -3'
miRNA:   3'- aUUguCUCUGUGUG--CGGUGaCAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.