miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 135892 0.68 0.958386
Target:  5'- -cGCGcAGGCACGCGUCGC-GUCuGGGa -3'
miRNA:   3'- auUGUcUCUGUGUGCGGUGaCAG-CCC- -5'
15839 5' -53.4 NC_004065.1 + 24831 0.69 0.950651
Target:  5'- gUggUGGAGACGCACGCgGCgcccgaUGUUGGcGg -3'
miRNA:   3'- -AuuGUCUCUGUGUGCGgUG------ACAGCC-C- -5'
15839 5' -53.4 NC_004065.1 + 27764 0.69 0.946446
Target:  5'- -cGCAucGAGACGCuGCGCCGCcGUCuGGa -3'
miRNA:   3'- auUGU--CUCUGUG-UGCGGUGaCAGcCC- -5'
15839 5' -53.4 NC_004065.1 + 188419 0.69 0.946446
Target:  5'- aGACAaaaacGGGCACACGUCAgaGcCGGGg -3'
miRNA:   3'- aUUGUc----UCUGUGUGCGGUgaCaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 109781 0.69 0.946446
Target:  5'- cAGCAG-GGCAgGCGCUACgccgCGGGc -3'
miRNA:   3'- aUUGUCuCUGUgUGCGGUGaca-GCCC- -5'
15839 5' -53.4 NC_004065.1 + 138239 0.69 0.942011
Target:  5'- ----cGAGGCGCuCGCCGCcGUCGaGGa -3'
miRNA:   3'- auuguCUCUGUGuGCGGUGaCAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 45191 0.69 0.937344
Target:  5'- cGACAGGGGCaACACGCCgccGCUGcCGc- -3'
miRNA:   3'- aUUGUCUCUG-UGUGCGG---UGACaGCcc -5'
15839 5' -53.4 NC_004065.1 + 60561 0.69 0.932445
Target:  5'- cGACGGAGACGCcgggucCGCaCACgg-CGGGg -3'
miRNA:   3'- aUUGUCUCUGUGu-----GCG-GUGacaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 193863 0.69 0.932445
Target:  5'- gAGCGGcuGACACAgCGCCGCUGgacuagcgaUCGGa -3'
miRNA:   3'- aUUGUCu-CUGUGU-GCGGUGAC---------AGCCc -5'
15839 5' -53.4 NC_004065.1 + 45800 0.7 0.927311
Target:  5'- --uCGGGGGCugGCGCCACacgccgcgUG-CGGGu -3'
miRNA:   3'- auuGUCUCUGugUGCGGUG--------ACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 170610 0.7 0.910503
Target:  5'- --uCGGAGACAUugGCCGgcGUCaGGGa -3'
miRNA:   3'- auuGUCUCUGUGugCGGUgaCAG-CCC- -5'
15839 5' -53.4 NC_004065.1 + 60779 0.7 0.910503
Target:  5'- cUGACGGAGAa--AUGCCGCUGUCa-- -3'
miRNA:   3'- -AUUGUCUCUgugUGCGGUGACAGccc -5'
15839 5' -53.4 NC_004065.1 + 199412 0.7 0.898138
Target:  5'- gGAC--GGACACGCGUCGCUGccUCGGa -3'
miRNA:   3'- aUUGucUCUGUGUGCGGUGAC--AGCCc -5'
15839 5' -53.4 NC_004065.1 + 43629 0.71 0.877898
Target:  5'- gGACGGGG-UGCugGUCGCUGUagaGGGa -3'
miRNA:   3'- aUUGUCUCuGUGugCGGUGACAg--CCC- -5'
15839 5' -53.4 NC_004065.1 + 119837 0.71 0.87719
Target:  5'- gGGCGGcGGCGCGucgcggcCGCCGCagagGUCGGGg -3'
miRNA:   3'- aUUGUCuCUGUGU-------GCGGUGa---CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 102523 0.71 0.866305
Target:  5'- cGGCAGAggacGACGCGCGCCuuguccucgucggugGCgccgggGUCGGGu -3'
miRNA:   3'- aUUGUCU----CUGUGUGCGG---------------UGa-----CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 204984 0.73 0.78839
Target:  5'- -uACGuGGGACACACGUCGgaggGUCGGGa -3'
miRNA:   3'- auUGU-CUCUGUGUGCGGUga--CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 111922 0.73 0.770014
Target:  5'- cGACgAGAGACGCcauggGCGCCGCcGUCGcGGu -3'
miRNA:   3'- aUUG-UCUCUGUG-----UGCGGUGaCAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 39392 0.76 0.662237
Target:  5'- cGACAGAGAgAUGCGUCGCacgcaaguugGUCGGGg -3'
miRNA:   3'- aUUGUCUCUgUGUGCGGUGa---------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 173901 0.66 0.990685
Target:  5'- -uGCAGaAGGCGaGCGCCGCcGUcgucCGGGa -3'
miRNA:   3'- auUGUC-UCUGUgUGCGGUGaCA----GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.