miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 93200 1.1 0.006793
Target:  5'- gUAACAGAGACACACGCCACUGUCGGGg -3'
miRNA:   3'- -AUUGUCUCUGUGUGCGGUGACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 104376 0.68 0.961923
Target:  5'- gAGCAcauGGCACACGCCACg--CGGcGg -3'
miRNA:   3'- aUUGUcu-CUGUGUGCGGUGacaGCC-C- -5'
15839 5' -53.4 NC_004065.1 + 192527 0.67 0.970988
Target:  5'- uUGGCGGAGAgccgccaggggucCGCACaGCC-CUG-CGGGa -3'
miRNA:   3'- -AUUGUCUCU-------------GUGUG-CGGuGACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 173901 0.66 0.990685
Target:  5'- -uGCAGaAGGCGaGCGCCGCcGUcgucCGGGa -3'
miRNA:   3'- auUGUC-UCUGUgUGCGGUGaCA----GCCC- -5'
15839 5' -53.4 NC_004065.1 + 102523 0.71 0.866305
Target:  5'- cGGCAGAggacGACGCGCGCCuuguccucgucggugGCgccgggGUCGGGu -3'
miRNA:   3'- aUUGUCU----CUGUGUGCGG---------------UGa-----CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 119837 0.71 0.87719
Target:  5'- gGGCGGcGGCGCGucgcggcCGCCGCagagGUCGGGg -3'
miRNA:   3'- aUUGUCuCUGUGU-------GCGGUGa---CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 199412 0.7 0.898138
Target:  5'- gGAC--GGACACGCGUCGCUGccUCGGa -3'
miRNA:   3'- aUUGucUCUGUGUGCGGUGAC--AGCCc -5'
15839 5' -53.4 NC_004065.1 + 60779 0.7 0.910503
Target:  5'- cUGACGGAGAa--AUGCCGCUGUCa-- -3'
miRNA:   3'- -AUUGUCUCUgugUGCGGUGACAGccc -5'
15839 5' -53.4 NC_004065.1 + 190607 0.7 0.921942
Target:  5'- aGACuGGGGAUAUAUGCC-C-GUCGGGg -3'
miRNA:   3'- aUUG-UCUCUGUGUGCGGuGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 66722 0.69 0.946446
Target:  5'- ---aAGAGGCugGCGCCcguGCcGUCGGa -3'
miRNA:   3'- auugUCUCUGugUGCGG---UGaCAGCCc -5'
15839 5' -53.4 NC_004065.1 + 162895 0.7 0.927311
Target:  5'- -cGCGuccAGGCGCGCGCCGCUGUCc-- -3'
miRNA:   3'- auUGUc--UCUGUGUGCGGUGACAGccc -5'
15839 5' -53.4 NC_004065.1 + 30086 0.7 0.91634
Target:  5'- gUGGCGGAG-CGCGCGCUGaugUGUCaGGGa -3'
miRNA:   3'- -AUUGUCUCuGUGUGCGGUg--ACAG-CCC- -5'
15839 5' -53.4 NC_004065.1 + 39392 0.76 0.662237
Target:  5'- cGACAGAGAgAUGCGUCGCacgcaaguugGUCGGGg -3'
miRNA:   3'- aUUGUCUCUgUGUGCGGUGa---------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 177482 0.69 0.942011
Target:  5'- cGGCGGGGGCGCACGgCgggGCcGcCGGGg -3'
miRNA:   3'- aUUGUCUCUGUGUGCgG---UGaCaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 111922 0.73 0.770014
Target:  5'- cGACgAGAGACGCcauggGCGCCGCcGUCGcGGu -3'
miRNA:   3'- aUUG-UCUCUGUG-----UGCGGUGaCAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 192648 0.7 0.910503
Target:  5'- cGAUAGuGGCACgguaauGCGUCGC-GUCGGGg -3'
miRNA:   3'- aUUGUCuCUGUG------UGCGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 45207 0.69 0.946446
Target:  5'- cAACGGAGACuacGCugGCC-CUccCGGGa -3'
miRNA:   3'- aUUGUCUCUG---UGugCGGuGAcaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 130657 0.68 0.96836
Target:  5'- gGACAGucGGCGC-CGUCGCUgccaacgcucGUCGGGc -3'
miRNA:   3'- aUUGUCu-CUGUGuGCGGUGA----------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 204984 0.73 0.78839
Target:  5'- -uACGuGGGACACACGUCGgaggGUCGGGa -3'
miRNA:   3'- auUGU-CUCUGUGUGCGGUga--CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 43629 0.71 0.877898
Target:  5'- gGACGGGG-UGCugGUCGCUGUagaGGGa -3'
miRNA:   3'- aUUGUCUCuGUGugCGGUGACAg--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.