miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 130657 0.68 0.96836
Target:  5'- gGACAGucGGCGC-CGUCGCUgccaacgcucGUCGGGc -3'
miRNA:   3'- aUUGUCu-CUGUGuGCGGUGA----------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 109216 0.66 0.989422
Target:  5'- -uACGcGGGCcuguuCACGCCGCUGUaccgucCGGGg -3'
miRNA:   3'- auUGUcUCUGu----GUGCGGUGACA------GCCC- -5'
15839 5' -53.4 NC_004065.1 + 104376 0.68 0.961923
Target:  5'- gAGCAcauGGCACACGCCACg--CGGcGg -3'
miRNA:   3'- aUUGUcu-CUGUGUGCGGUGacaGCC-C- -5'
15839 5' -53.4 NC_004065.1 + 111922 0.73 0.770014
Target:  5'- cGACgAGAGACGCcauggGCGCCGCcGUCGcGGu -3'
miRNA:   3'- aUUG-UCUCUGUG-----UGCGGUGaCAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 86577 0.66 0.98803
Target:  5'- -cGCAGAGcgGCACcuCGUCGCaGUCGGa -3'
miRNA:   3'- auUGUCUC--UGUGu-GCGGUGaCAGCCc -5'
15839 5' -53.4 NC_004065.1 + 33591 0.67 0.978842
Target:  5'- gUGGCGGAcGGCAUcacgAUGCUGCUG-CGGGc -3'
miRNA:   3'- -AUUGUCU-CUGUG----UGCGGUGACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 99476 0.66 0.989422
Target:  5'- gGACcaGGAGACguGCgagAUGCCGCcGUUGGGg -3'
miRNA:   3'- aUUG--UCUCUG--UG---UGCGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 78060 0.66 0.990685
Target:  5'- cGGCGG-GGCGCACGaacCUGUCGaGGu -3'
miRNA:   3'- aUUGUCuCUGUGUGCgguGACAGC-CC- -5'
15839 5' -53.4 NC_004065.1 + 39392 0.76 0.662237
Target:  5'- cGACAGAGAgAUGCGUCGCacgcaaguugGUCGGGg -3'
miRNA:   3'- aUUGUCUCUgUGUGCGGUGa---------CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 93200 1.1 0.006793
Target:  5'- gUAACAGAGACACACGCCACUGUCGGGg -3'
miRNA:   3'- -AUUGUCUCUGUGUGCGGUGACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 102523 0.71 0.866305
Target:  5'- cGGCAGAggacGACGCGCGCCuuguccucgucggugGCgccgggGUCGGGu -3'
miRNA:   3'- aUUGUCU----CUGUGUGCGG---------------UGa-----CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 199412 0.7 0.898138
Target:  5'- gGAC--GGACACGCGUCGCUGccUCGGa -3'
miRNA:   3'- aUUGucUCUGUGUGCGGUGAC--AGCCc -5'
15839 5' -53.4 NC_004065.1 + 204984 0.73 0.78839
Target:  5'- -uACGuGGGACACACGUCGgaggGUCGGGa -3'
miRNA:   3'- auUGU-CUCUGUGUGCGGUga--CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 69188 0.72 0.847932
Target:  5'- cGACGGAGuuCGCACaGUCGCUGUCGa- -3'
miRNA:   3'- aUUGUCUCu-GUGUG-CGGUGACAGCcc -5'
15839 5' -53.4 NC_004065.1 + 169605 0.67 0.97372
Target:  5'- -cGCGGGGGCcguCACGUCGCUuaaccucGUCGGa -3'
miRNA:   3'- auUGUCUCUGu--GUGCGGUGA-------CAGCCc -5'
15839 5' -53.4 NC_004065.1 + 131205 0.67 0.97127
Target:  5'- cGGCGcGAGAUuuuUAUGCCGCagaagucgaUGUCGGGg -3'
miRNA:   3'- aUUGU-CUCUGu--GUGCGGUG---------ACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 149543 0.68 0.965246
Target:  5'- --cCAGAGACGCgacagGCGCUcguccgacucgcGCUcGUCGGGu -3'
miRNA:   3'- auuGUCUCUGUG-----UGCGG------------UGA-CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 32896 0.68 0.965246
Target:  5'- ----cGAGAUGC-CGUC-CUGUCGGGg -3'
miRNA:   3'- auuguCUCUGUGuGCGGuGACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 170610 0.7 0.910503
Target:  5'- --uCGGAGACAUugGCCGgcGUCaGGGa -3'
miRNA:   3'- auuGUCUCUGUGugCGGUgaCAG-CCC- -5'
15839 5' -53.4 NC_004065.1 + 45800 0.7 0.927311
Target:  5'- --uCGGGGGCugGCGCCACacgccgcgUG-CGGGu -3'
miRNA:   3'- auuGUCUCUGugUGCGGUG--------ACaGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.