miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 5' -53.4 NC_004065.1 + 94375 0.67 0.976504
Target:  5'- -cGCAGAGGguCuAgGUCGCUGUCGGc -3'
miRNA:   3'- auUGUCUCUguG-UgCGGUGACAGCCc -5'
15839 5' -53.4 NC_004065.1 + 24551 0.72 0.839944
Target:  5'- cAGCGGAGACGa--GCCcCUcGUCGGGa -3'
miRNA:   3'- aUUGUCUCUGUgugCGGuGA-CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 166392 0.75 0.712277
Target:  5'- gAGCAGGGACA--UGCUGCUgGUCGGGa -3'
miRNA:   3'- aUUGUCUCUGUguGCGGUGA-CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 40902 0.66 0.98803
Target:  5'- -------cGCACGCGCCGgcUUGUCGGGc -3'
miRNA:   3'- auugucucUGUGUGCGGU--GACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 196045 0.66 0.98803
Target:  5'- -uGCAuGAG-CGCGaGCCAUcGUCGGGg -3'
miRNA:   3'- auUGU-CUCuGUGUgCGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 24831 0.69 0.950651
Target:  5'- gUggUGGAGACGCACGCgGCgcccgaUGUUGGcGg -3'
miRNA:   3'- -AuuGUCUCUGUGUGCGgUG------ACAGCC-C- -5'
15839 5' -53.4 NC_004065.1 + 19436 0.68 0.963942
Target:  5'- --cCGGAGGCAcCGCGCUGCUGgcgaugagcguggUGGGg -3'
miRNA:   3'- auuGUCUCUGU-GUGCGGUGACa------------GCCC- -5'
15839 5' -53.4 NC_004065.1 + 66118 0.68 0.965246
Target:  5'- cGACAucaccGAGGCGCugGCgCGCUGggccgCGGa -3'
miRNA:   3'- aUUGU-----CUCUGUGugCG-GUGACa----GCCc -5'
15839 5' -53.4 NC_004065.1 + 32896 0.68 0.965246
Target:  5'- ----cGAGAUGC-CGUC-CUGUCGGGg -3'
miRNA:   3'- auuguCUCUGUGuGCGGuGACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 149543 0.68 0.965246
Target:  5'- --cCAGAGACGCgacagGCGCUcguccgacucgcGCUcGUCGGGu -3'
miRNA:   3'- auuGUCUCUGUG-----UGCGG------------UGA-CAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 131205 0.67 0.97127
Target:  5'- cGGCGcGAGAUuuuUAUGCCGCagaagucgaUGUCGGGg -3'
miRNA:   3'- aUUGU-CUCUGu--GUGCGGUG---------ACAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 169605 0.67 0.97372
Target:  5'- -cGCGGGGGCcguCACGUCGCUuaaccucGUCGGa -3'
miRNA:   3'- auUGUCUCUGu--GUGCGGUGA-------CAGCCc -5'
15839 5' -53.4 NC_004065.1 + 45800 0.7 0.927311
Target:  5'- --uCGGGGGCugGCGCCACacgccgcgUG-CGGGu -3'
miRNA:   3'- auuGUCUCUGugUGCGGUG--------ACaGCCC- -5'
15839 5' -53.4 NC_004065.1 + 170610 0.7 0.910503
Target:  5'- --uCGGAGACAUugGCCGgcGUCaGGGa -3'
miRNA:   3'- auuGUCUCUGUGugCGGUgaCAG-CCC- -5'
15839 5' -53.4 NC_004065.1 + 53780 0.7 0.910503
Target:  5'- gGACGGAGGCGUAaaCCAC-GUCGGGa -3'
miRNA:   3'- aUUGUCUCUGUGUgcGGUGaCAGCCC- -5'
15839 5' -53.4 NC_004065.1 + 135892 0.68 0.958386
Target:  5'- -cGCGcAGGCACGCGUCGC-GUCuGGGa -3'
miRNA:   3'- auUGUcUCUGUGUGCGGUGaCAG-CCC- -5'
15839 5' -53.4 NC_004065.1 + 201533 0.7 0.898138
Target:  5'- cGACGGAG-CucCGCGgCGCUGUCGGc -3'
miRNA:   3'- aUUGUCUCuGu-GUGCgGUGACAGCCc -5'
15839 5' -53.4 NC_004065.1 + 68167 0.71 0.891613
Target:  5'- -cGCGGcGGCGCGCGCgacggaGCUGUCGGc -3'
miRNA:   3'- auUGUCuCUGUGUGCGg-----UGACAGCCc -5'
15839 5' -53.4 NC_004065.1 + 123542 0.66 0.9865
Target:  5'- -uACAGGGugGCcaGCGCCGCguccucgucGUaCGGGu -3'
miRNA:   3'- auUGUCUCugUG--UGCGGUGa--------CA-GCCC- -5'
15839 5' -53.4 NC_004065.1 + 225386 0.66 0.9865
Target:  5'- cGGCGGGGGCGCugGC-GCUGaUGGu -3'
miRNA:   3'- aUUGUCUCUGUGugCGgUGACaGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.