miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1584 5' -57.7 NC_001347.2 + 68343 0.66 0.926699
Target:  5'- gCGCGCucucauuGGgUCCgcuggAGCCCAC-CACCGa -3'
miRNA:   3'- gGCGCGu------UCaAGG-----UCGGGUGcGUGGU- -5'
1584 5' -57.7 NC_001347.2 + 107809 0.66 0.926699
Target:  5'- aUCGCGCugGAGgaCCugcuGCCCAUGCgACUg -3'
miRNA:   3'- -GGCGCG--UUCaaGGu---CGGGUGCG-UGGu -5'
1584 5' -57.7 NC_001347.2 + 65369 0.66 0.926699
Target:  5'- aCCGCGCc-GUgcgUCuGCCCGugaGCACCGc -3'
miRNA:   3'- -GGCGCGuuCAa--GGuCGGGUg--CGUGGU- -5'
1584 5' -57.7 NC_001347.2 + 65330 0.66 0.926699
Target:  5'- aCGUGguGGUggCCauacgcaacgaAGCCaCGCGUACCAa -3'
miRNA:   3'- gGCGCguUCAa-GG-----------UCGG-GUGCGUGGU- -5'
1584 5' -57.7 NC_001347.2 + 69612 0.66 0.921461
Target:  5'- gCCGCaGCAugccGUcCCAGUCCGcCGC-CCAa -3'
miRNA:   3'- -GGCG-CGUu---CAaGGUCGGGU-GCGuGGU- -5'
1584 5' -57.7 NC_001347.2 + 192494 0.66 0.921461
Target:  5'- cCUGCGCGAGgcccggcgCCAGCUCAagaUGgACCu -3'
miRNA:   3'- -GGCGCGUUCaa------GGUCGGGU---GCgUGGu -5'
1584 5' -57.7 NC_001347.2 + 116795 0.66 0.921461
Target:  5'- gUCGCGCGcGUaCCacGGCCCGauguaguacCGUACCAg -3'
miRNA:   3'- -GGCGCGUuCAaGG--UCGGGU---------GCGUGGU- -5'
1584 5' -57.7 NC_001347.2 + 156993 0.66 0.921461
Target:  5'- aCCGCaGUcuGggCCGuggcuGCCCGCGCGCUu -3'
miRNA:   3'- -GGCG-CGuuCaaGGU-----CGGGUGCGUGGu -5'
1584 5' -57.7 NC_001347.2 + 208077 0.66 0.921461
Target:  5'- gCCGCGuCGGGUaCCGcuGCCgCagauggGCGCACCGa -3'
miRNA:   3'- -GGCGC-GUUCAaGGU--CGG-G------UGCGUGGU- -5'
1584 5' -57.7 NC_001347.2 + 87015 0.66 0.920925
Target:  5'- gCCGCGCcggcgugcuuaaaGAGcaacgccUCCGuGCCCauGCGCACCu -3'
miRNA:   3'- -GGCGCG-------------UUCa------AGGU-CGGG--UGCGUGGu -5'
1584 5' -57.7 NC_001347.2 + 183493 0.66 0.916003
Target:  5'- gCGCGCAGcc-CCAGCgcgUCGCGUACCc -3'
miRNA:   3'- gGCGCGUUcaaGGUCG---GGUGCGUGGu -5'
1584 5' -57.7 NC_001347.2 + 174714 0.66 0.916003
Target:  5'- uUCGUGCAGGagggCCuGCgcaaCUACGCGCCGc -3'
miRNA:   3'- -GGCGCGUUCaa--GGuCG----GGUGCGUGGU- -5'
1584 5' -57.7 NC_001347.2 + 78753 0.66 0.916003
Target:  5'- uUCuCGC-AGUUCguGCCCG-GCACCGa -3'
miRNA:   3'- -GGcGCGuUCAAGguCGGGUgCGUGGU- -5'
1584 5' -57.7 NC_001347.2 + 169110 0.66 0.916003
Target:  5'- gCGUGUAcacGGccUCGGCCgCGCGCGCCGc -3'
miRNA:   3'- gGCGCGU---UCaaGGUCGG-GUGCGUGGU- -5'
1584 5' -57.7 NC_001347.2 + 197829 0.66 0.916003
Target:  5'- aCCGaCGCGAuGUUCgaAGCCggcaACGUGCCAu -3'
miRNA:   3'- -GGC-GCGUU-CAAGg-UCGGg---UGCGUGGU- -5'
1584 5' -57.7 NC_001347.2 + 66213 0.66 0.914322
Target:  5'- gCCGCGCAAca-CCA-CCCGCGCcuucgugggcaacgACCAu -3'
miRNA:   3'- -GGCGCGUUcaaGGUcGGGUGCG--------------UGGU- -5'
1584 5' -57.7 NC_001347.2 + 79572 0.66 0.912622
Target:  5'- aCGCGCAAGUgccugcacgaccugcUCCAGUaCCugGaCGCg- -3'
miRNA:   3'- gGCGCGUUCA---------------AGGUCG-GGugC-GUGgu -5'
1584 5' -57.7 NC_001347.2 + 98365 0.66 0.910324
Target:  5'- aCCGUcaGCAcguuggcGUUCCGGCCCAgGUgauCCAa -3'
miRNA:   3'- -GGCG--CGUu------CAAGGUCGGGUgCGu--GGU- -5'
1584 5' -57.7 NC_001347.2 + 148659 0.66 0.910324
Target:  5'- uCCGCGCAGGgcUCgGGCaaGCGgcCGCCAc -3'
miRNA:   3'- -GGCGCGUUCa-AGgUCGggUGC--GUGGU- -5'
1584 5' -57.7 NC_001347.2 + 45273 0.66 0.910324
Target:  5'- cCUGCGUAuGUaCCAGUCCAaGCACg- -3'
miRNA:   3'- -GGCGCGUuCAaGGUCGGGUgCGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.