miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15841 3' -55.7 NC_004065.1 + 187294 0.66 0.974503
Target:  5'- gCGGCCGcCgcgcugCGAUCacugGGGCGGAggagcgcucGCCg -3'
miRNA:   3'- gGCCGGCaGa-----GCUAG----UCCGCUU---------UGGa -5'
15841 3' -55.7 NC_004065.1 + 112890 0.66 0.974503
Target:  5'- gCCaGGcCCGUCUCcguccgGAUCAGGUGcgacACCa -3'
miRNA:   3'- -GG-CC-GGCAGAG------CUAGUCCGCuu--UGGa -5'
15841 3' -55.7 NC_004065.1 + 30150 0.66 0.974503
Target:  5'- aCCGGCCG-CUCGugcuGuGCGgcACCg -3'
miRNA:   3'- -GGCCGGCaGAGCuaguC-CGCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 131245 0.66 0.974503
Target:  5'- cUCGGUCGUCUCcGUgGcGGCGGAcguucugcgcGCCUu -3'
miRNA:   3'- -GGCCGGCAGAGcUAgU-CCGCUU----------UGGA- -5'
15841 3' -55.7 NC_004065.1 + 162532 0.66 0.974503
Target:  5'- gCCgGGCCagGUCUCGGaCGGGCucucGAGACUc -3'
miRNA:   3'- -GG-CCGG--CAGAGCUaGUCCG----CUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 67850 0.66 0.974251
Target:  5'- gCGGUCGUC-CGAUCcccgauccuccgaGGGCuGAcgGACCUu -3'
miRNA:   3'- gGCCGGCAGaGCUAG-------------UCCG-CU--UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 212177 0.66 0.971905
Target:  5'- cUCGGCUG-CUCGAcUC-GGCGGcaaucccaGACCUg -3'
miRNA:   3'- -GGCCGGCaGAGCU-AGuCCGCU--------UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 225754 0.66 0.971905
Target:  5'- gUGGUCGUCUgGAUCuGuGCGAugAAUCUc -3'
miRNA:   3'- gGCCGGCAGAgCUAGuC-CGCU--UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 34651 0.66 0.971905
Target:  5'- cUCGGCCGUCaCGGUgucCAGGa-AGGCCg -3'
miRNA:   3'- -GGCCGGCAGaGCUA---GUCCgcUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 19801 0.66 0.971905
Target:  5'- gCGGUCGUCUCGuggcaCAGGgGAcACg- -3'
miRNA:   3'- gGCCGGCAGAGCua---GUCCgCUuUGga -5'
15841 3' -55.7 NC_004065.1 + 227485 0.66 0.971905
Target:  5'- aCGGCCGUCgacCGAUC-GGaccAGCCg -3'
miRNA:   3'- gGCCGGCAGa--GCUAGuCCgcuUUGGa -5'
15841 3' -55.7 NC_004065.1 + 111974 0.66 0.971905
Target:  5'- aCCGGCCGcgaugaaggcgCUCGAggGGGCc--GCCUa -3'
miRNA:   3'- -GGCCGGCa----------GAGCUagUCCGcuuUGGA- -5'
15841 3' -55.7 NC_004065.1 + 199652 0.66 0.971905
Target:  5'- aCGGCCGUUUucauuggggcCGAUCAcGCGGucuauGCCa -3'
miRNA:   3'- gGCCGGCAGA----------GCUAGUcCGCUu----UGGa -5'
15841 3' -55.7 NC_004065.1 + 118067 0.66 0.970257
Target:  5'- gCGGCCGgugaCUUGAgggcgUCcuucuggaucccgaaAGGCGAGACCc -3'
miRNA:   3'- gGCCGGCa---GAGCU-----AG---------------UCCGCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 81166 0.66 0.969121
Target:  5'- cCCGccGCCGccucCUCGAUCGcGGCGGccGCCUc -3'
miRNA:   3'- -GGC--CGGCa---GAGCUAGU-CCGCUu-UGGA- -5'
15841 3' -55.7 NC_004065.1 + 120444 0.66 0.969121
Target:  5'- uCCgGGCCcUCUUGcuGUCGGGCGGcgggaacucaGACCa -3'
miRNA:   3'- -GG-CCGGcAGAGC--UAGUCCGCU----------UUGGa -5'
15841 3' -55.7 NC_004065.1 + 41956 0.66 0.969121
Target:  5'- aCGGCCGgguUCUCGAcgCuGGCGcuGAUCUc -3'
miRNA:   3'- gGCCGGC---AGAGCUa-GuCCGCu-UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 169175 0.66 0.969121
Target:  5'- aCgGGCCgGUCUCGAUguGaGUGuucGCCg -3'
miRNA:   3'- -GgCCGG-CAGAGCUAguC-CGCuu-UGGa -5'
15841 3' -55.7 NC_004065.1 + 168619 0.66 0.969121
Target:  5'- gCGGCUGcuggcgCUgGugccgCGGGCGGAGCCg -3'
miRNA:   3'- gGCCGGCa-----GAgCua---GUCCGCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 188983 0.66 0.962976
Target:  5'- gCUGGCCGUUUUGGcgCAGGCcucGAUCg -3'
miRNA:   3'- -GGCCGGCAGAGCUa-GUCCGcu-UUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.