miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15841 3' -55.7 NC_004065.1 + 81166 0.66 0.969121
Target:  5'- cCCGccGCCGccucCUCGAUCGcGGCGGccGCCUc -3'
miRNA:   3'- -GGC--CGGCa---GAGCUAGU-CCGCUu-UGGA- -5'
15841 3' -55.7 NC_004065.1 + 30390 0.66 0.962976
Target:  5'- aCGGCCGUacgCGGUCuGGUaGAguuuaAGCCUg -3'
miRNA:   3'- gGCCGGCAga-GCUAGuCCG-CU-----UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 135615 0.66 0.962976
Target:  5'- aCGGCCGUCacgCgGGUCuacGGCGccACCa -3'
miRNA:   3'- gGCCGGCAGa--G-CUAGu--CCGCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 41956 0.66 0.969121
Target:  5'- aCGGCCGgguUCUCGAcgCuGGCGcuGAUCUc -3'
miRNA:   3'- gGCCGGC---AGAGCUa-GuCCGCu-UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 201191 0.66 0.959603
Target:  5'- gCGGCgCGUCcCGGcUCGGGCGgcGCg- -3'
miRNA:   3'- gGCCG-GCAGaGCU-AGUCCGCuuUGga -5'
15841 3' -55.7 NC_004065.1 + 188983 0.66 0.962976
Target:  5'- gCUGGCCGUUUUGGcgCAGGCcucGAUCg -3'
miRNA:   3'- -GGCCGGCAGAGCUa-GUCCGcu-UUGGa -5'
15841 3' -55.7 NC_004065.1 + 199775 0.66 0.962976
Target:  5'- gUGGCuCGUCUUGAgguuUCGGGUGAcGCg- -3'
miRNA:   3'- gGCCG-GCAGAGCU----AGUCCGCUuUGga -5'
15841 3' -55.7 NC_004065.1 + 168619 0.66 0.969121
Target:  5'- gCGGCUGcuggcgCUgGugccgCGGGCGGAGCCg -3'
miRNA:   3'- gGCCGGCa-----GAgCua---GUCCGCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 169175 0.66 0.969121
Target:  5'- aCgGGCCgGUCUCGAUguGaGUGuucGCCg -3'
miRNA:   3'- -GgCCGG-CAGAGCUAguC-CGCuu-UGGa -5'
15841 3' -55.7 NC_004065.1 + 110138 0.66 0.959603
Target:  5'- uCCGGCCGcgccggcaaguUCUCGcUCAGG-GAcgucuuccccGACCUc -3'
miRNA:   3'- -GGCCGGC-----------AGAGCuAGUCCgCU----------UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 43051 0.66 0.959603
Target:  5'- gUCGGCU-UCUCGAggcgUCGGcGCGAcaGACCg -3'
miRNA:   3'- -GGCCGGcAGAGCU----AGUC-CGCU--UUGGa -5'
15841 3' -55.7 NC_004065.1 + 30150 0.66 0.974503
Target:  5'- aCCGGCCG-CUCGugcuGuGCGgcACCg -3'
miRNA:   3'- -GGCCGGCaGAGCuaguC-CGCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 120444 0.66 0.969121
Target:  5'- uCCgGGCCcUCUUGcuGUCGGGCGGcgggaacucaGACCa -3'
miRNA:   3'- -GG-CCGGcAGAGC--UAGUCCGCU----------UUGGa -5'
15841 3' -55.7 NC_004065.1 + 112890 0.66 0.974503
Target:  5'- gCCaGGcCCGUCUCcguccgGAUCAGGUGcgacACCa -3'
miRNA:   3'- -GG-CC-GGCAGAG------CUAGUCCGCuu--UGGa -5'
15841 3' -55.7 NC_004065.1 + 209569 0.66 0.959603
Target:  5'- cCCGGCCGgcugCUggcgggcgugCGGUCAGGaucAGCCUu -3'
miRNA:   3'- -GGCCGGCa---GA----------GCUAGUCCgcuUUGGA- -5'
15841 3' -55.7 NC_004065.1 + 162532 0.66 0.974503
Target:  5'- gCCgGGCCagGUCUCGGaCGGGCucucGAGACUc -3'
miRNA:   3'- -GG-CCGG--CAGAGCUaGUCCG----CUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 211144 0.66 0.959603
Target:  5'- uCUGGCCG-UUCGGgggggagCGGGCGu-GCCg -3'
miRNA:   3'- -GGCCGGCaGAGCUa------GUCCGCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 227485 0.66 0.971905
Target:  5'- aCGGCCGUCgacCGAUC-GGaccAGCCg -3'
miRNA:   3'- gGCCGGCAGa--GCUAGuCCgcuUUGGa -5'
15841 3' -55.7 NC_004065.1 + 131245 0.66 0.974503
Target:  5'- cUCGGUCGUCUCcGUgGcGGCGGAcguucugcgcGCCUu -3'
miRNA:   3'- -GGCCGGCAGAGcUAgU-CCGCUU----------UGGA- -5'
15841 3' -55.7 NC_004065.1 + 36098 0.66 0.959603
Target:  5'- uCUGGuCCG-CgCGAcUCAGGCGGGAUCg -3'
miRNA:   3'- -GGCC-GGCaGaGCU-AGUCCGCUUUGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.