miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15841 3' -55.7 NC_004065.1 + 91673 1.1 0.004751
Target:  5'- cCCGGCCGUCUCGAUCAGGCGAAACCUg -3'
miRNA:   3'- -GGCCGGCAGAGCUAGUCCGCUUUGGA- -5'
15841 3' -55.7 NC_004065.1 + 120558 0.78 0.438588
Target:  5'- gCGGCgGUCggcgCGAgCGGGCGGGACCUc -3'
miRNA:   3'- gGCCGgCAGa---GCUaGUCCGCUUUGGA- -5'
15841 3' -55.7 NC_004065.1 + 142636 0.76 0.549011
Target:  5'- -aGGCCG-CUCGAUCAaccGGCGGAugCa -3'
miRNA:   3'- ggCCGGCaGAGCUAGU---CCGCUUugGa -5'
15841 3' -55.7 NC_004065.1 + 129548 0.76 0.558662
Target:  5'- aCGaGCCGUC-CGAUCGGGcCGAuGCCg -3'
miRNA:   3'- gGC-CGGCAGaGCUAGUCC-GCUuUGGa -5'
15841 3' -55.7 NC_004065.1 + 109054 0.74 0.656773
Target:  5'- gCGGCaggaUCGAUCAGGCGGAACa- -3'
miRNA:   3'- gGCCGgcagAGCUAGUCCGCUUUGga -5'
15841 3' -55.7 NC_004065.1 + 25607 0.72 0.762132
Target:  5'- -aGGCCGaUCUCGAUgGGGCcu-GCCg -3'
miRNA:   3'- ggCCGGC-AGAGCUAgUCCGcuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 36428 0.72 0.762132
Target:  5'- aCGGCUccacgGUCaaGGUCuGGCGAGACCUc -3'
miRNA:   3'- gGCCGG-----CAGagCUAGuCCGCUUUGGA- -5'
15841 3' -55.7 NC_004065.1 + 37230 0.72 0.762132
Target:  5'- gCC-GCCGUCUCcaugCAGGCGAAGCa- -3'
miRNA:   3'- -GGcCGGCAGAGcua-GUCCGCUUUGga -5'
15841 3' -55.7 NC_004065.1 + 36818 0.72 0.768514
Target:  5'- aCGGUaccaugcgauuucuCGUCUCGAUCAGaGgGggGCCc -3'
miRNA:   3'- gGCCG--------------GCAGAGCUAGUC-CgCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 165860 0.71 0.780218
Target:  5'- gCCGGaCgGUCUcucaCGGUCccgaAGGCGAGGCCg -3'
miRNA:   3'- -GGCC-GgCAGA----GCUAG----UCCGCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 208249 0.71 0.78908
Target:  5'- aCCGaggaGCCGaCggaacgCGGUCAGGUGGAACCg -3'
miRNA:   3'- -GGC----CGGCaGa-----GCUAGUCCGCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 13543 0.71 0.78908
Target:  5'- aCCGGCUGUCuaaacUCGAagAuGGaCGAAACCUa -3'
miRNA:   3'- -GGCCGGCAG-----AGCUagU-CC-GCUUUGGA- -5'
15841 3' -55.7 NC_004065.1 + 222898 0.71 0.806403
Target:  5'- cCCGGUCGUCUCGucGUCGGuGuUGGAAUCg -3'
miRNA:   3'- -GGCCGGCAGAGC--UAGUC-C-GCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 87268 0.71 0.806403
Target:  5'- -aGGCCGUCgUCGucgCGGGaGAGACCg -3'
miRNA:   3'- ggCCGGCAG-AGCua-GUCCgCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 125916 0.71 0.814849
Target:  5'- cCCGGCCG-CUCGGcacgugCAGGCc-GACCg -3'
miRNA:   3'- -GGCCGGCaGAGCUa-----GUCCGcuUUGGa -5'
15841 3' -55.7 NC_004065.1 + 17525 0.71 0.814849
Target:  5'- uUCGGCCGUCaUCGcagCGGGCGAuuuGGCg- -3'
miRNA:   3'- -GGCCGGCAG-AGCua-GUCCGCU---UUGga -5'
15841 3' -55.7 NC_004065.1 + 55774 0.71 0.82314
Target:  5'- aUGGCgGUCUCGGcgccgagCAGGCGAucgcggcugacGACCa -3'
miRNA:   3'- gGCCGgCAGAGCUa------GUCCGCU-----------UUGGa -5'
15841 3' -55.7 NC_004065.1 + 104618 0.71 0.82314
Target:  5'- gCCGGCCGaCUuccaCGAccugCGGGCGAAGCa- -3'
miRNA:   3'- -GGCCGGCaGA----GCUa---GUCCGCUUUGga -5'
15841 3' -55.7 NC_004065.1 + 16979 0.71 0.82314
Target:  5'- aCGGCCGUUUCGAggAGGUcu-ACCg -3'
miRNA:   3'- gGCCGGCAGAGCUagUCCGcuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 176562 0.7 0.83127
Target:  5'- cUCGGCgGUCUUGAaccucUCGGGCacGACCa -3'
miRNA:   3'- -GGCCGgCAGAGCU-----AGUCCGcuUUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.