miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15841 3' -55.7 NC_004065.1 + 30390 0.66 0.962976
Target:  5'- aCGGCCGUacgCGGUCuGGUaGAguuuaAGCCUg -3'
miRNA:   3'- gGCCGGCAga-GCUAGuCCG-CU-----UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 135615 0.66 0.962976
Target:  5'- aCGGCCGUCacgCgGGUCuacGGCGccACCa -3'
miRNA:   3'- gGCCGGCAGa--G-CUAGu--CCGCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 199775 0.66 0.962976
Target:  5'- gUGGCuCGUCUUGAgguuUCGGGUGAcGCg- -3'
miRNA:   3'- gGCCG-GCAGAGCU----AGUCCGCUuUGga -5'
15841 3' -55.7 NC_004065.1 + 6294 0.66 0.962976
Target:  5'- cUCGGUCGUCgcCGGUCccAGGCuGAGACg- -3'
miRNA:   3'- -GGCCGGCAGa-GCUAG--UCCG-CUUUGga -5'
15841 3' -55.7 NC_004065.1 + 211144 0.66 0.959603
Target:  5'- uCUGGCCG-UUCGGgggggagCGGGCGu-GCCg -3'
miRNA:   3'- -GGCCGGCaGAGCUa------GUCCGCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 209569 0.66 0.959603
Target:  5'- cCCGGCCGgcugCUggcgggcgugCGGUCAGGaucAGCCUu -3'
miRNA:   3'- -GGCCGGCa---GA----------GCUAGUCCgcuUUGGA- -5'
15841 3' -55.7 NC_004065.1 + 201191 0.66 0.959603
Target:  5'- gCGGCgCGUCcCGGcUCGGGCGgcGCg- -3'
miRNA:   3'- gGCCG-GCAGaGCU-AGUCCGCuuUGga -5'
15841 3' -55.7 NC_004065.1 + 110138 0.66 0.959603
Target:  5'- uCCGGCCGcgccggcaaguUCUCGcUCAGG-GAcgucuuccccGACCUc -3'
miRNA:   3'- -GGCCGGC-----------AGAGCuAGUCCgCU----------UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 43051 0.66 0.959603
Target:  5'- gUCGGCU-UCUCGAggcgUCGGcGCGAcaGACCg -3'
miRNA:   3'- -GGCCGGcAGAGCU----AGUC-CGCU--UUGGa -5'
15841 3' -55.7 NC_004065.1 + 36098 0.66 0.959603
Target:  5'- uCUGGuCCG-CgCGAcUCAGGCGGGAUCg -3'
miRNA:   3'- -GGCC-GGCaGaGCU-AGUCCGCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 124061 0.67 0.956025
Target:  5'- aCGuGuCCGUCcgcaccaCGGUCAGcGCGAAGCCc -3'
miRNA:   3'- gGC-C-GGCAGa------GCUAGUC-CGCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 63079 0.67 0.956025
Target:  5'- gCCGGUCGcCggCGAgcgaCGGGCGuugGACCUc -3'
miRNA:   3'- -GGCCGGCaGa-GCUa---GUCCGCu--UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 165713 0.67 0.956025
Target:  5'- cCCGGCUGUCccUUGAcCAcGGUGAAcACCg -3'
miRNA:   3'- -GGCCGGCAG--AGCUaGU-CCGCUU-UGGa -5'
15841 3' -55.7 NC_004065.1 + 56596 0.67 0.956025
Target:  5'- uUCuGCCGUCgUCGAgcgagCAGGCG--GCCg -3'
miRNA:   3'- -GGcCGGCAG-AGCUa----GUCCGCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 151533 0.67 0.956025
Target:  5'- gCCGGCCGgg-CGGugUCGGGCGc-GCUUg -3'
miRNA:   3'- -GGCCGGCagaGCU--AGUCCGCuuUGGA- -5'
15841 3' -55.7 NC_004065.1 + 7422 0.67 0.955656
Target:  5'- -gGGCCGUCaacaaccaggccaUCGuggcagCGGGCGAggaGACCUu -3'
miRNA:   3'- ggCCGGCAG-------------AGCua----GUCCGCU---UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 195594 0.67 0.952238
Target:  5'- cCCGGCCGUg-CGAUCGuggaguccaauGGC-AGGCCg -3'
miRNA:   3'- -GGCCGGCAgaGCUAGU-----------CCGcUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 201800 0.67 0.952238
Target:  5'- -aGGCCGcguacagggUCUCGGUCAGGUccucGAACUg -3'
miRNA:   3'- ggCCGGC---------AGAGCUAGUCCGc---UUUGGa -5'
15841 3' -55.7 NC_004065.1 + 21964 0.67 0.948237
Target:  5'- -gGGCCGUCgUCGG-CAGGaCGGugagGGCCg -3'
miRNA:   3'- ggCCGGCAG-AGCUaGUCC-GCU----UUGGa -5'
15841 3' -55.7 NC_004065.1 + 61590 0.67 0.94402
Target:  5'- --cGCCGUCUCGAcguaacauUC-GGCGAGAUCc -3'
miRNA:   3'- ggcCGGCAGAGCU--------AGuCCGCUUUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.