miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15841 3' -55.7 NC_004065.1 + 5 0.68 0.934931
Target:  5'- cCCGGCCGUCUgagugCGcgCGGGCcc--CCg -3'
miRNA:   3'- -GGCCGGCAGA-----GCuaGUCCGcuuuGGa -5'
15841 3' -55.7 NC_004065.1 + 3577 0.68 0.930055
Target:  5'- gCGaGCCcgGUCUCGAUC-GGCGAGGacucuCCUg -3'
miRNA:   3'- gGC-CGG--CAGAGCUAGuCCGCUUU-----GGA- -5'
15841 3' -55.7 NC_004065.1 + 6294 0.66 0.962976
Target:  5'- cUCGGUCGUCgcCGGUCccAGGCuGAGACg- -3'
miRNA:   3'- -GGCCGGCAGa-GCUAG--UCCG-CUUUGga -5'
15841 3' -55.7 NC_004065.1 + 7422 0.67 0.955656
Target:  5'- -gGGCCGUCaacaaccaggccaUCGuggcagCGGGCGAggaGACCUu -3'
miRNA:   3'- ggCCGGCAG-------------AGCua----GUCCGCU---UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 8506 0.69 0.889749
Target:  5'- cCCGGCCGUUcacuGUCGGGUGGcuuucGACCg -3'
miRNA:   3'- -GGCCGGCAGagc-UAGUCCGCU-----UUGGa -5'
15841 3' -55.7 NC_004065.1 + 13543 0.71 0.78908
Target:  5'- aCCGGCUGUCuaaacUCGAagAuGGaCGAAACCUa -3'
miRNA:   3'- -GGCCGGCAG-----AGCUagU-CC-GCUUUGGA- -5'
15841 3' -55.7 NC_004065.1 + 16979 0.71 0.82314
Target:  5'- aCGGCCGUUUCGAggAGGUcu-ACCg -3'
miRNA:   3'- gGCCGGCAGAGCUagUCCGcuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 17525 0.71 0.814849
Target:  5'- uUCGGCCGUCaUCGcagCGGGCGAuuuGGCg- -3'
miRNA:   3'- -GGCCGGCAG-AGCua-GUCCGCU---UUGga -5'
15841 3' -55.7 NC_004065.1 + 19801 0.66 0.971905
Target:  5'- gCGGUCGUCUCGuggcaCAGGgGAcACg- -3'
miRNA:   3'- gGCCGGCAGAGCua---GUCCgCUuUGga -5'
15841 3' -55.7 NC_004065.1 + 21964 0.67 0.948237
Target:  5'- -gGGCCGUCgUCGG-CAGGaCGGugagGGCCg -3'
miRNA:   3'- ggCCGGCAG-AGCUaGUCC-GCU----UUGGa -5'
15841 3' -55.7 NC_004065.1 + 25607 0.72 0.762132
Target:  5'- -aGGCCGaUCUCGAUgGGGCcu-GCCg -3'
miRNA:   3'- ggCCGGC-AGAGCUAgUCCGcuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 29483 0.68 0.930055
Target:  5'- gCGGUgcUCUUGGUCAGGCGuu-CCa -3'
miRNA:   3'- gGCCGgcAGAGCUAGUCCGCuuuGGa -5'
15841 3' -55.7 NC_004065.1 + 30150 0.66 0.974503
Target:  5'- aCCGGCCG-CUCGugcuGuGCGgcACCg -3'
miRNA:   3'- -GGCCGGCaGAGCuaguC-CGCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 30390 0.66 0.962976
Target:  5'- aCGGCCGUacgCGGUCuGGUaGAguuuaAGCCUg -3'
miRNA:   3'- gGCCGGCAga-GCUAGuCCG-CU-----UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 34651 0.66 0.971905
Target:  5'- cUCGGCCGUCaCGGUgucCAGGa-AGGCCg -3'
miRNA:   3'- -GGCCGGCAGaGCUA---GUCCgcUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 36098 0.66 0.959603
Target:  5'- uCUGGuCCG-CgCGAcUCAGGCGGGAUCg -3'
miRNA:   3'- -GGCC-GGCaGaGCU-AGUCCGCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 36428 0.72 0.762132
Target:  5'- aCGGCUccacgGUCaaGGUCuGGCGAGACCUc -3'
miRNA:   3'- gGCCGG-----CAGagCUAGuCCGCUUUGGA- -5'
15841 3' -55.7 NC_004065.1 + 36818 0.72 0.768514
Target:  5'- aCGGUaccaugcgauuucuCGUCUCGAUCAGaGgGggGCCc -3'
miRNA:   3'- gGCCG--------------GCAGAGCUAGUC-CgCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 37230 0.72 0.762132
Target:  5'- gCC-GCCGUCUCcaugCAGGCGAAGCa- -3'
miRNA:   3'- -GGcCGGCAGAGcua-GUCCGCUUUGga -5'
15841 3' -55.7 NC_004065.1 + 40827 0.69 0.902356
Target:  5'- uUCGGCCGcgucccugacguUgUCcAUCAGGCGAuuGACCUc -3'
miRNA:   3'- -GGCCGGC------------AgAGcUAGUCCGCU--UUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.