miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15841 3' -55.7 NC_004065.1 + 29483 0.68 0.930055
Target:  5'- gCGGUgcUCUUGGUCAGGCGuu-CCa -3'
miRNA:   3'- gGCCGgcAGAGCUAGUCCGCuuuGGa -5'
15841 3' -55.7 NC_004065.1 + 189051 0.69 0.879058
Target:  5'- aCCacGCCGUCUCGAUCuucuGgguguccggaguuacGCGAAACCg -3'
miRNA:   3'- -GGc-CGGCAGAGCUAGu---C---------------CGCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 194439 0.69 0.881103
Target:  5'- cCCGGgCGcCUCGGUCGaagcgguugggcacGGCGgcGCCg -3'
miRNA:   3'- -GGCCgGCaGAGCUAGU--------------CCGCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 145998 0.69 0.883129
Target:  5'- --cGCCGUCUCGAUCGagaccaguacGGCGAu-CCa -3'
miRNA:   3'- ggcCGGCAGAGCUAGU----------CCGCUuuGGa -5'
15841 3' -55.7 NC_004065.1 + 124650 0.69 0.900519
Target:  5'- gCCGGCCGUCagCGAguccggguccgccgUCAGGaaGAACUUg -3'
miRNA:   3'- -GGCCGGCAGa-GCU--------------AGUCCgcUUUGGA- -5'
15841 3' -55.7 NC_004065.1 + 40827 0.69 0.902356
Target:  5'- uUCGGCCGcgucccugacguUgUCcAUCAGGCGAuuGACCUc -3'
miRNA:   3'- -GGCCGGC------------AgAGcUAGUCCGCU--UUGGA- -5'
15841 3' -55.7 NC_004065.1 + 226429 0.69 0.904774
Target:  5'- gCGGCCGUCUC---CAGGagaguccucgccgauCGAGACCg -3'
miRNA:   3'- gGCCGGCAGAGcuaGUCC---------------GCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 61159 0.68 0.924958
Target:  5'- aCGG-CGUCgaaGAUCGGGuUGGAACCg -3'
miRNA:   3'- gGCCgGCAGag-CUAGUCC-GCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 202160 0.68 0.924958
Target:  5'- cCCGGCCGUCcaucUCGAcCAGuucgccccGCGgcACCa -3'
miRNA:   3'- -GGCCGGCAG----AGCUaGUC--------CGCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 162306 0.7 0.869273
Target:  5'- gCGGUCG-CUCG-UCAcGGCGAuACCg -3'
miRNA:   3'- gGCCGGCaGAGCuAGU-CCGCUuUGGa -5'
15841 3' -55.7 NC_004065.1 + 110302 0.7 0.862046
Target:  5'- cCCGGCCGUCaCGGUCucgcagcucuGGcCGggGCUc -3'
miRNA:   3'- -GGCCGGCAGaGCUAGu---------CC-GCuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 55774 0.71 0.82314
Target:  5'- aUGGCgGUCUCGGcgccgagCAGGCGAucgcggcugacGACCa -3'
miRNA:   3'- gGCCGgCAGAGCUa------GUCCGCU-----------UUGGa -5'
15841 3' -55.7 NC_004065.1 + 109054 0.74 0.656773
Target:  5'- gCGGCaggaUCGAUCAGGCGGAACa- -3'
miRNA:   3'- gGCCGgcagAGCUAGUCCGCUUUGga -5'
15841 3' -55.7 NC_004065.1 + 25607 0.72 0.762132
Target:  5'- -aGGCCGaUCUCGAUgGGGCcu-GCCg -3'
miRNA:   3'- ggCCGGC-AGAGCUAgUCCGcuuUGGa -5'
15841 3' -55.7 NC_004065.1 + 37230 0.72 0.762132
Target:  5'- gCC-GCCGUCUCcaugCAGGCGAAGCa- -3'
miRNA:   3'- -GGcCGGCAGAGcua-GUCCGCUUUGga -5'
15841 3' -55.7 NC_004065.1 + 165860 0.71 0.780218
Target:  5'- gCCGGaCgGUCUcucaCGGUCccgaAGGCGAGGCCg -3'
miRNA:   3'- -GGCC-GgCAGA----GCUAG----UCCGCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 208249 0.71 0.78908
Target:  5'- aCCGaggaGCCGaCggaacgCGGUCAGGUGGAACCg -3'
miRNA:   3'- -GGC----CGGCaGa-----GCUAGUCCGCUUUGGa -5'
15841 3' -55.7 NC_004065.1 + 13543 0.71 0.78908
Target:  5'- aCCGGCUGUCuaaacUCGAagAuGGaCGAAACCUa -3'
miRNA:   3'- -GGCCGGCAG-----AGCUagU-CC-GCUUUGGA- -5'
15841 3' -55.7 NC_004065.1 + 17525 0.71 0.814849
Target:  5'- uUCGGCCGUCaUCGcagCGGGCGAuuuGGCg- -3'
miRNA:   3'- -GGCCGGCAG-AGCua-GUCCGCU---UUGga -5'
15841 3' -55.7 NC_004065.1 + 125916 0.71 0.814849
Target:  5'- cCCGGCCG-CUCGGcacgugCAGGCc-GACCg -3'
miRNA:   3'- -GGCCGGCaGAGCUa-----GUCCGcuUUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.