miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15841 5' -61 NC_004065.1 + 146674 0.66 0.828535
Target:  5'- uGGAGGuuucaccaccauCCUC-CugGUGAUCGGGuGCUa -3'
miRNA:   3'- -CCUCC------------GGAGcGugCGCUAGUCC-CGGc -5'
15841 5' -61 NC_004065.1 + 38167 0.66 0.828535
Target:  5'- cGGGGcGCCaUCGCG-GCGAuagUCGcGGCCGu -3'
miRNA:   3'- -CCUC-CGG-AGCGUgCGCU---AGUcCCGGC- -5'
15841 5' -61 NC_004065.1 + 179180 0.66 0.828535
Target:  5'- aGAGGCCcCGCGCccgGCGuUCAcguucucuucGGGCCc -3'
miRNA:   3'- cCUCCGGaGCGUG---CGCuAGU----------CCCGGc -5'
15841 5' -61 NC_004065.1 + 221773 0.66 0.820592
Target:  5'- cGAcGGUaUCGUcuGCGUuGUCGGGGCCGg -3'
miRNA:   3'- cCU-CCGgAGCG--UGCGcUAGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 8720 0.66 0.820592
Target:  5'- gGGGGGCCuguuaUCGaaaACGUGAcgacCGGaGGCCGu -3'
miRNA:   3'- -CCUCCGG-----AGCg--UGCGCUa---GUC-CCGGC- -5'
15841 5' -61 NC_004065.1 + 179677 0.66 0.820592
Target:  5'- gGGGGGgCUCGgGauCGCGG-CGGuGGCCa -3'
miRNA:   3'- -CCUCCgGAGCgU--GCGCUaGUC-CCGGc -5'
15841 5' -61 NC_004065.1 + 19963 0.66 0.820592
Target:  5'- gGGucuGGCCUCGUAUGCGGUauc-GCCu -3'
miRNA:   3'- -CCu--CCGGAGCGUGCGCUAguccCGGc -5'
15841 5' -61 NC_004065.1 + 63512 0.66 0.820592
Target:  5'- cGGAuGGCCUCGCccuCGCGGccgUAGaucGCCGc -3'
miRNA:   3'- -CCU-CCGGAGCGu--GCGCUa--GUCc--CGGC- -5'
15841 5' -61 NC_004065.1 + 162472 0.66 0.812498
Target:  5'- -aAGGCCUCGCGCGgcCGGcCAGGacgaggagcGCCa -3'
miRNA:   3'- ccUCCGGAGCGUGC--GCUaGUCC---------CGGc -5'
15841 5' -61 NC_004065.1 + 186905 0.66 0.812498
Target:  5'- cGGcGGuCUUCGCgaGCGCgGAUCGGcGCCGg -3'
miRNA:   3'- -CCuCC-GGAGCG--UGCG-CUAGUCcCGGC- -5'
15841 5' -61 NC_004065.1 + 1972 0.66 0.812498
Target:  5'- gGGAGGCC-CGaCGCuaGAUCu-GGCUGg -3'
miRNA:   3'- -CCUCCGGaGC-GUGcgCUAGucCCGGC- -5'
15841 5' -61 NC_004065.1 + 163647 0.66 0.804262
Target:  5'- cGAGcGCagcCGCuCGaCGAUCAGcGGCCGg -3'
miRNA:   3'- cCUC-CGga-GCGuGC-GCUAGUC-CCGGC- -5'
15841 5' -61 NC_004065.1 + 30983 0.66 0.804262
Target:  5'- gGGAuGCgCUCGC-CGCG-UCGGGcGCUGa -3'
miRNA:   3'- -CCUcCG-GAGCGuGCGCuAGUCC-CGGC- -5'
15841 5' -61 NC_004065.1 + 114960 0.66 0.795889
Target:  5'- cGAGGCCgcguccUCGCGCGCGccGUUgcccucggcccuGGcGGCCGc -3'
miRNA:   3'- cCUCCGG------AGCGUGCGC--UAG------------UC-CCGGC- -5'
15841 5' -61 NC_004065.1 + 119522 0.66 0.787387
Target:  5'- -uGGGCggCGCggggACGUGGUCgAGGGCCa -3'
miRNA:   3'- ccUCCGgaGCG----UGCGCUAG-UCCCGGc -5'
15841 5' -61 NC_004065.1 + 128377 0.66 0.787387
Target:  5'- cGGGGCUUCgGCG-GCGAgagccggcugUgGGGGCCGa -3'
miRNA:   3'- cCUCCGGAG-CGUgCGCU----------AgUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 211836 0.67 0.778763
Target:  5'- cGGAcaaGGCUaUCGCACGgGAgUCccGGCCGg -3'
miRNA:   3'- -CCU---CCGG-AGCGUGCgCU-AGucCCGGC- -5'
15841 5' -61 NC_004065.1 + 159951 0.67 0.776152
Target:  5'- cGGGGUC-CGCGCcuuugaggaucgcgGCGAUCGuGGCCGu -3'
miRNA:   3'- cCUCCGGaGCGUG--------------CGCUAGUcCCGGC- -5'
15841 5' -61 NC_004065.1 + 159756 0.67 0.770023
Target:  5'- cGGGGUugcgccaguucuUUCGCAUGUGcGUCAGGGCgGu -3'
miRNA:   3'- cCUCCG------------GAGCGUGCGC-UAGUCCCGgC- -5'
15841 5' -61 NC_004065.1 + 208378 0.67 0.770023
Target:  5'- cGGAcaGGUCUUGgACGUGAUUAucggcuGGGCCu -3'
miRNA:   3'- -CCU--CCGGAGCgUGCGCUAGU------CCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.