miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15841 5' -61 NC_004065.1 + 91711 1.09 0.001695
Target:  5'- aGGAGGCCUCGCACGCGAUCAGGGCCGc -3'
miRNA:   3'- -CCUCCGGAGCGUGCGCUAGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 31814 0.84 0.086829
Target:  5'- gGGGGGCCUgcCGgACGCGGaguUCAGGGCCGa -3'
miRNA:   3'- -CCUCCGGA--GCgUGCGCU---AGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 230015 0.78 0.226757
Target:  5'- cGGGGGCC-CGCGCGCacUCAGacGGCCGg -3'
miRNA:   3'- -CCUCCGGaGCGUGCGcuAGUC--CCGGC- -5'
15841 5' -61 NC_004065.1 + 39398 0.77 0.265476
Target:  5'- aGAGauGCgUCGCACGCaaguuGGUCGGGGCCGa -3'
miRNA:   3'- cCUC--CGgAGCGUGCG-----CUAGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 198759 0.75 0.31541
Target:  5'- cGGAGGUC-CGUccgcacagacccaACGgGAUCAGGGCCu -3'
miRNA:   3'- -CCUCCGGaGCG-------------UGCgCUAGUCCCGGc -5'
15841 5' -61 NC_004065.1 + 128454 0.74 0.349061
Target:  5'- cGGAGGCgUcCGCggGCGCGAUCAGGcuaccacugccagcGCCGc -3'
miRNA:   3'- -CCUCCGgA-GCG--UGCGCUAGUCC--------------CGGC- -5'
15841 5' -61 NC_004065.1 + 29125 0.74 0.351247
Target:  5'- gGGAGGCCggUCGCccaGCGCGA-CGGGcaGCCGa -3'
miRNA:   3'- -CCUCCGG--AGCG---UGCGCUaGUCC--CGGC- -5'
15841 5' -61 NC_004065.1 + 89158 0.74 0.37364
Target:  5'- uGAuGGaCUCGCugGCGGcggccuUCAGGGCCGu -3'
miRNA:   3'- cCU-CCgGAGCGugCGCU------AGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 92522 0.72 0.463583
Target:  5'- -cGGuGCCUCGCGCGCGcgUAcGGGCgGg -3'
miRNA:   3'- ccUC-CGGAGCGUGCGCuaGU-CCCGgC- -5'
15841 5' -61 NC_004065.1 + 123380 0.72 0.475835
Target:  5'- gGGAGGCag-GCGCGacuauacggguccauCGGUCAGGGCCc -3'
miRNA:   3'- -CCUCCGgagCGUGC---------------GCUAGUCCCGGc -5'
15841 5' -61 NC_004065.1 + 129869 0.71 0.516247
Target:  5'- aGGAGGUgUucgaccugugcCGCGCGCugcggcggacccuGAUCGGGGCCu -3'
miRNA:   3'- -CCUCCGgA-----------GCGUGCG-------------CUAGUCCCGGc -5'
15841 5' -61 NC_004065.1 + 182719 0.71 0.517161
Target:  5'- cGGAucGGCCUCaCGgGCGAcgcCGGGGCCa -3'
miRNA:   3'- -CCU--CCGGAGcGUgCGCUa--GUCCCGGc -5'
15841 5' -61 NC_004065.1 + 47730 0.71 0.526339
Target:  5'- cGuGGCCUUGauCACGgGGUCAGaGGCCa -3'
miRNA:   3'- cCuCCGGAGC--GUGCgCUAGUC-CCGGc -5'
15841 5' -61 NC_004065.1 + 138239 0.7 0.592019
Target:  5'- cGAGGCgCUCGC-CGCcGUCgaggAGGGUCGg -3'
miRNA:   3'- cCUCCG-GAGCGuGCGcUAG----UCCCGGC- -5'
15841 5' -61 NC_004065.1 + 199445 0.7 0.592019
Target:  5'- cGAGGCgCUCGC-CGCGGcggaacgGGGGCUGg -3'
miRNA:   3'- cCUCCG-GAGCGuGCGCUag-----UCCCGGC- -5'
15841 5' -61 NC_004065.1 + 207699 0.7 0.592019
Target:  5'- --uGGCCUCGuCGUGCGA-CGGGGUCGu -3'
miRNA:   3'- ccuCCGGAGC-GUGCGCUaGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 194106 0.7 0.592019
Target:  5'- gGGAGGCgUCGCAgaccCGCGGguaUCGGuacGGCCu -3'
miRNA:   3'- -CCUCCGgAGCGU----GCGCU---AGUC---CCGGc -5'
15841 5' -61 NC_004065.1 + 66112 0.7 0.605364
Target:  5'- gGGGGGCgacaucaccgaggCGCugGCGcgCuGGGCCGc -3'
miRNA:   3'- -CCUCCGga-----------GCGugCGCuaGuCCCGGC- -5'
15841 5' -61 NC_004065.1 + 1 0.7 0.611095
Target:  5'- --GGGCC-CGCGCGCacUCAGacGGCCGg -3'
miRNA:   3'- ccUCCGGaGCGUGCGcuAGUC--CCGGC- -5'
15841 5' -61 NC_004065.1 + 97470 0.69 0.620657
Target:  5'- aGGAGGCCUUuaACaCGAUCcuGGGCUu -3'
miRNA:   3'- -CCUCCGGAGcgUGcGCUAGu-CCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.