miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15841 5' -61 NC_004065.1 + 202249 0.67 0.766497
Target:  5'- aGGAGGCCcuccagacggcggCGCagcgucucgauGCGCGG-CGGGGUCa -3'
miRNA:   3'- -CCUCCGGa------------GCG-----------UGCGCUaGUCCCGGc -5'
15841 5' -61 NC_004065.1 + 126278 0.67 0.75223
Target:  5'- cGGAGGCCcCGcCGCGCGAacCGacGCCGa -3'
miRNA:   3'- -CCUCCGGaGC-GUGCGCUa-GUccCGGC- -5'
15841 5' -61 NC_004065.1 + 205524 0.67 0.75223
Target:  5'- uGGGGCCg---GCGC--UCAGGGCCGg -3'
miRNA:   3'- cCUCCGGagcgUGCGcuAGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 125723 0.67 0.743191
Target:  5'- gGGcGGGCC-CGCcuGCGCGAacgccucagaCAGGGCCc -3'
miRNA:   3'- -CC-UCCGGaGCG--UGCGCUa---------GUCCCGGc -5'
15841 5' -61 NC_004065.1 + 189094 0.67 0.743191
Target:  5'- cGAGGaCCUCGCccggugucucUGUGcUCAGGGCCc -3'
miRNA:   3'- cCUCC-GGAGCGu---------GCGCuAGUCCCGGc -5'
15841 5' -61 NC_004065.1 + 24385 0.67 0.740462
Target:  5'- -aAGGCCUCGCugcGCGUGAgaagCAGGuagauguagaucuuGCCGc -3'
miRNA:   3'- ccUCCGGAGCG---UGCGCUa---GUCC--------------CGGC- -5'
15841 5' -61 NC_004065.1 + 103744 0.67 0.734067
Target:  5'- --cGGCgUCGguuCGCGCGG-CGGGGCCu -3'
miRNA:   3'- ccuCCGgAGC---GUGCGCUaGUCCCGGc -5'
15841 5' -61 NC_004065.1 + 205171 0.67 0.734067
Target:  5'- cGAGGCCgccgUCGC-CGCcaacAUCGGGcGCCGc -3'
miRNA:   3'- cCUCCGG----AGCGuGCGc---UAGUCC-CGGC- -5'
15841 5' -61 NC_004065.1 + 50627 0.68 0.728554
Target:  5'- cGGAGGCCaccuggauacagccgUUGUACGa---CAGGGCCa -3'
miRNA:   3'- -CCUCCGG---------------AGCGUGCgcuaGUCCCGGc -5'
15841 5' -61 NC_004065.1 + 161829 0.68 0.724865
Target:  5'- aGGuaaGUCUUGUACaGCGG-CGGGGCCGa -3'
miRNA:   3'- -CCuc-CGGAGCGUG-CGCUaGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 67570 0.68 0.715594
Target:  5'- cGAGGCCuUCGCcgaaGCGca-GGGGCCu -3'
miRNA:   3'- cCUCCGG-AGCGug--CGCuagUCCCGGc -5'
15841 5' -61 NC_004065.1 + 187295 0.68 0.715594
Target:  5'- --cGGCCgcCGCGCuGCGAUCAcugGGGCgGa -3'
miRNA:   3'- ccuCCGGa-GCGUG-CGCUAGU---CCCGgC- -5'
15841 5' -61 NC_004065.1 + 195990 0.68 0.715594
Target:  5'- cGGGuGUCUCGguUGCGAUCcGGGCg- -3'
miRNA:   3'- cCUC-CGGAGCguGCGCUAGuCCCGgc -5'
15841 5' -61 NC_004065.1 + 179726 0.68 0.714663
Target:  5'- uGuuGCCUCGCgaucgccGCGCGGacggcggucUCGGGGCCc -3'
miRNA:   3'- cCucCGGAGCG-------UGCGCU---------AGUCCCGGc -5'
15841 5' -61 NC_004065.1 + 111970 0.68 0.70626
Target:  5'- uGGAGGaCgaagacgUGUACGaCGAgCAGGGCCGc -3'
miRNA:   3'- -CCUCCgGa------GCGUGC-GCUaGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 130157 0.68 0.70626
Target:  5'- cGAGGCCgUCGCuaucCGCGAccccggcgccaUCuggugcgacGGGGCCGu -3'
miRNA:   3'- cCUCCGG-AGCGu---GCGCU-----------AG---------UCCCGGC- -5'
15841 5' -61 NC_004065.1 + 88961 0.68 0.696871
Target:  5'- --cGGgCUCGCGCGUGAUgGuGGCCa -3'
miRNA:   3'- ccuCCgGAGCGUGCGCUAgUcCCGGc -5'
15841 5' -61 NC_004065.1 + 91119 0.68 0.696871
Target:  5'- aGAGcGCCUCGCugaGCG--CGGGGUCGu -3'
miRNA:   3'- cCUC-CGGAGCGug-CGCuaGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 130167 0.68 0.687435
Target:  5'- ----cCCUCGCACggcgGCGAUCGGGGCg- -3'
miRNA:   3'- ccuccGGAGCGUG----CGCUAGUCCCGgc -5'
15841 5' -61 NC_004065.1 + 153895 0.68 0.687435
Target:  5'- uGGGGaCC-CGCugGCGGUCuGGGUa- -3'
miRNA:   3'- cCUCC-GGaGCGugCGCUAGuCCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.