miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15841 5' -61 NC_004065.1 + 1 0.7 0.611095
Target:  5'- --GGGCC-CGCGCGCacUCAGacGGCCGg -3'
miRNA:   3'- ccUCCGGaGCGUGCGcuAGUC--CCGGC- -5'
15841 5' -61 NC_004065.1 + 1972 0.66 0.812498
Target:  5'- gGGAGGCC-CGaCGCuaGAUCu-GGCUGg -3'
miRNA:   3'- -CCUCCGGaGC-GUGcgCUAGucCCGGC- -5'
15841 5' -61 NC_004065.1 + 8720 0.66 0.820592
Target:  5'- gGGGGGCCuguuaUCGaaaACGUGAcgacCGGaGGCCGu -3'
miRNA:   3'- -CCUCCGG-----AGCg--UGCGCUa---GUC-CCGGC- -5'
15841 5' -61 NC_004065.1 + 19963 0.66 0.820592
Target:  5'- gGGucuGGCCUCGUAUGCGGUauc-GCCu -3'
miRNA:   3'- -CCu--CCGGAGCGUGCGCUAguccCGGc -5'
15841 5' -61 NC_004065.1 + 24385 0.67 0.740462
Target:  5'- -aAGGCCUCGCugcGCGUGAgaagCAGGuagauguagaucuuGCCGc -3'
miRNA:   3'- ccUCCGGAGCG---UGCGCUa---GUCC--------------CGGC- -5'
15841 5' -61 NC_004065.1 + 29125 0.74 0.351247
Target:  5'- gGGAGGCCggUCGCccaGCGCGA-CGGGcaGCCGa -3'
miRNA:   3'- -CCUCCGG--AGCG---UGCGCUaGUCC--CGGC- -5'
15841 5' -61 NC_004065.1 + 30983 0.66 0.804262
Target:  5'- gGGAuGCgCUCGC-CGCG-UCGGGcGCUGa -3'
miRNA:   3'- -CCUcCG-GAGCGuGCGCuAGUCC-CGGC- -5'
15841 5' -61 NC_004065.1 + 31814 0.84 0.086829
Target:  5'- gGGGGGCCUgcCGgACGCGGaguUCAGGGCCGa -3'
miRNA:   3'- -CCUCCGGA--GCgUGCGCU---AGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 32987 0.68 0.67796
Target:  5'- cGGAGGCCUCGCG---GAcCA-GGCCGg -3'
miRNA:   3'- -CCUCCGGAGCGUgcgCUaGUcCCGGC- -5'
15841 5' -61 NC_004065.1 + 33647 0.69 0.630227
Target:  5'- cGGGGcGCgCUUcgaccguccgGCGCGCGGggAGGGCCGc -3'
miRNA:   3'- -CCUC-CG-GAG----------CGUGCGCUagUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 38167 0.66 0.828535
Target:  5'- cGGGGcGCCaUCGCG-GCGAuagUCGcGGCCGu -3'
miRNA:   3'- -CCUC-CGG-AGCGUgCGCU---AGUcCCGGC- -5'
15841 5' -61 NC_004065.1 + 39398 0.77 0.265476
Target:  5'- aGAGauGCgUCGCACGCaaguuGGUCGGGGCCGa -3'
miRNA:   3'- cCUC--CGgAGCGUGCG-----CUAGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 47730 0.71 0.526339
Target:  5'- cGuGGCCUUGauCACGgGGUCAGaGGCCa -3'
miRNA:   3'- cCuCCGGAGC--GUGCgCUAGUC-CCGGc -5'
15841 5' -61 NC_004065.1 + 50627 0.68 0.728554
Target:  5'- cGGAGGCCaccuggauacagccgUUGUACGa---CAGGGCCa -3'
miRNA:   3'- -CCUCCGG---------------AGCGUGCgcuaGUCCCGGc -5'
15841 5' -61 NC_004065.1 + 63512 0.66 0.820592
Target:  5'- cGGAuGGCCUCGCccuCGCGGccgUAGaucGCCGc -3'
miRNA:   3'- -CCU-CCGGAGCGu--GCGCUa--GUCc--CGGC- -5'
15841 5' -61 NC_004065.1 + 66112 0.7 0.605364
Target:  5'- gGGGGGCgacaucaccgaggCGCugGCGcgCuGGGCCGc -3'
miRNA:   3'- -CCUCCGga-----------GCGugCGCuaGuCCCGGC- -5'
15841 5' -61 NC_004065.1 + 67570 0.68 0.715594
Target:  5'- cGAGGCCuUCGCcgaaGCGca-GGGGCCu -3'
miRNA:   3'- cCUCCGG-AGCGug--CGCuagUCCCGGc -5'
15841 5' -61 NC_004065.1 + 88961 0.68 0.696871
Target:  5'- --cGGgCUCGCGCGUGAUgGuGGCCa -3'
miRNA:   3'- ccuCCgGAGCGUGCGCUAgUcCCGGc -5'
15841 5' -61 NC_004065.1 + 89158 0.74 0.37364
Target:  5'- uGAuGGaCUCGCugGCGGcggccuUCAGGGCCGu -3'
miRNA:   3'- cCU-CCgGAGCGugCGCU------AGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 91119 0.68 0.696871
Target:  5'- aGAGcGCCUCGCugaGCG--CGGGGUCGu -3'
miRNA:   3'- cCUC-CGGAGCGug-CGCuaGUCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.