miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15841 5' -61 NC_004065.1 + 24385 0.67 0.740462
Target:  5'- -aAGGCCUCGCugcGCGUGAgaagCAGGuagauguagaucuuGCCGc -3'
miRNA:   3'- ccUCCGGAGCG---UGCGCUa---GUCC--------------CGGC- -5'
15841 5' -61 NC_004065.1 + 32987 0.68 0.67796
Target:  5'- cGGAGGCCUCGCG---GAcCA-GGCCGg -3'
miRNA:   3'- -CCUCCGGAGCGUgcgCUaGUcCCGGC- -5'
15841 5' -61 NC_004065.1 + 153895 0.68 0.687435
Target:  5'- uGGGGaCC-CGCugGCGGUCuGGGUa- -3'
miRNA:   3'- cCUCC-GGaGCGugCGCUAGuCCCGgc -5'
15841 5' -61 NC_004065.1 + 88961 0.68 0.696871
Target:  5'- --cGGgCUCGCGCGUGAUgGuGGCCa -3'
miRNA:   3'- ccuCCgGAGCGUGCGCUAgUcCCGGc -5'
15841 5' -61 NC_004065.1 + 91119 0.68 0.696871
Target:  5'- aGAGcGCCUCGCugaGCG--CGGGGUCGu -3'
miRNA:   3'- cCUC-CGGAGCGug-CGCuaGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 130157 0.68 0.70626
Target:  5'- cGAGGCCgUCGCuaucCGCGAccccggcgccaUCuggugcgacGGGGCCGu -3'
miRNA:   3'- cCUCCGG-AGCGu---GCGCU-----------AG---------UCCCGGC- -5'
15841 5' -61 NC_004065.1 + 195990 0.68 0.715594
Target:  5'- cGGGuGUCUCGguUGCGAUCcGGGCg- -3'
miRNA:   3'- cCUC-CGGAGCguGCGCUAGuCCCGgc -5'
15841 5' -61 NC_004065.1 + 50627 0.68 0.728554
Target:  5'- cGGAGGCCaccuggauacagccgUUGUACGa---CAGGGCCa -3'
miRNA:   3'- -CCUCCGG---------------AGCGUGCgcuaGUCCCGGc -5'
15841 5' -61 NC_004065.1 + 103744 0.67 0.734067
Target:  5'- --cGGCgUCGguuCGCGCGG-CGGGGCCu -3'
miRNA:   3'- ccuCCGgAGC---GUGCGCUaGUCCCGGc -5'
15841 5' -61 NC_004065.1 + 116126 0.68 0.67511
Target:  5'- cGGAGGUa--GCugGuCGGcguccugcggcggcUCGGGGCCGg -3'
miRNA:   3'- -CCUCCGgagCGugC-GCU--------------AGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 105896 0.69 0.668451
Target:  5'- cGGAGGCUUUcagACG-GAUguGGGCCGg -3'
miRNA:   3'- -CCUCCGGAGcg-UGCgCUAguCCCGGC- -5'
15841 5' -61 NC_004065.1 + 92056 0.69 0.639797
Target:  5'- cGAGGCauCUCaCGCGCGcUCggAGGGCCGc -3'
miRNA:   3'- cCUCCG--GAGcGUGCGCuAG--UCCCGGC- -5'
15841 5' -61 NC_004065.1 + 128454 0.74 0.349061
Target:  5'- cGGAGGCgUcCGCggGCGCGAUCAGGcuaccacugccagcGCCGc -3'
miRNA:   3'- -CCUCCGgA-GCG--UGCGCUAGUCC--------------CGGC- -5'
15841 5' -61 NC_004065.1 + 29125 0.74 0.351247
Target:  5'- gGGAGGCCggUCGCccaGCGCGA-CGGGcaGCCGa -3'
miRNA:   3'- -CCUCCGG--AGCG---UGCGCUaGUCC--CGGC- -5'
15841 5' -61 NC_004065.1 + 92522 0.72 0.463583
Target:  5'- -cGGuGCCUCGCGCGCGcgUAcGGGCgGg -3'
miRNA:   3'- ccUC-CGGAGCGUGCGCuaGU-CCCGgC- -5'
15841 5' -61 NC_004065.1 + 47730 0.71 0.526339
Target:  5'- cGuGGCCUUGauCACGgGGUCAGaGGCCa -3'
miRNA:   3'- cCuCCGGAGC--GUGCgCUAGUC-CCGGc -5'
15841 5' -61 NC_004065.1 + 138239 0.7 0.592019
Target:  5'- cGAGGCgCUCGC-CGCcGUCgaggAGGGUCGg -3'
miRNA:   3'- cCUCCG-GAGCGuGCGcUAG----UCCCGGC- -5'
15841 5' -61 NC_004065.1 + 194106 0.7 0.592019
Target:  5'- gGGAGGCgUCGCAgaccCGCGGguaUCGGuacGGCCu -3'
miRNA:   3'- -CCUCCGgAGCGU----GCGCU---AGUC---CCGGc -5'
15841 5' -61 NC_004065.1 + 207699 0.7 0.592019
Target:  5'- --uGGCCUCGuCGUGCGA-CGGGGUCGu -3'
miRNA:   3'- ccuCCGGAGC-GUGCGCUaGUCCCGGC- -5'
15841 5' -61 NC_004065.1 + 66112 0.7 0.605364
Target:  5'- gGGGGGCgacaucaccgaggCGCugGCGcgCuGGGCCGc -3'
miRNA:   3'- -CCUCCGga-----------GCGugCGCuaGuCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.