miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 3' -54.2 NC_004065.1 + 91135 0.66 0.991746
Target:  5'- -aGUCGGUGAUGGgGUCGUagaaGACGGg -3'
miRNA:   3'- agCAGCUGCUGCUgCAGCAg---CUGCUa -5'
15845 3' -54.2 NC_004065.1 + 114009 0.66 0.991746
Target:  5'- cCGUCGGCaGagagcugcccccGCGGCGcaCGUCGGCGGa -3'
miRNA:   3'- aGCAGCUG-C------------UGCUGCa-GCAGCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 121635 0.66 0.991746
Target:  5'- cCGagGAUGGCGuugagcGCGUCGUCGuccuCGAa -3'
miRNA:   3'- aGCagCUGCUGC------UGCAGCAGCu---GCUa -5'
15845 3' -54.2 NC_004065.1 + 70575 0.66 0.991746
Target:  5'- aCGUCucgcaaacaACGACGACGUCGaUCGGaGGUg -3'
miRNA:   3'- aGCAGc--------UGCUGCUGCAGC-AGCUgCUA- -5'
15845 3' -54.2 NC_004065.1 + 91787 0.66 0.991746
Target:  5'- cUCcUCGACGGCGGCGagCGccUCGACa-- -3'
miRNA:   3'- -AGcAGCUGCUGCUGCa-GC--AGCUGcua -5'
15845 3' -54.2 NC_004065.1 + 199197 0.66 0.991746
Target:  5'- uUCGUCGagggucGCGAgGACG-CGcaccgCGACGGUg -3'
miRNA:   3'- -AGCAGC------UGCUgCUGCaGCa----GCUGCUA- -5'
15845 3' -54.2 NC_004065.1 + 105215 0.66 0.991746
Target:  5'- uUCGUgGACGccCGGCGgaCGUCgGACGAg -3'
miRNA:   3'- -AGCAgCUGCu-GCUGCa-GCAG-CUGCUa -5'
15845 3' -54.2 NC_004065.1 + 19770 0.66 0.991746
Target:  5'- gUCGUCGAuCGAUGGgcaguucgaGUCGUCcGCGGUc -3'
miRNA:   3'- -AGCAGCU-GCUGCUg--------CAGCAGcUGCUA- -5'
15845 3' -54.2 NC_004065.1 + 120482 0.66 0.991746
Target:  5'- gUCGcUGACGACGGUGUCGUgcccgggguaGACGGUg -3'
miRNA:   3'- -AGCaGCUGCUGCUGCAGCAg---------CUGCUA- -5'
15845 3' -54.2 NC_004065.1 + 98880 0.66 0.991746
Target:  5'- gUCGUCGuCGcccACG-CGcUCGUCGACGc- -3'
miRNA:   3'- -AGCAGCuGC---UGCuGC-AGCAGCUGCua -5'
15845 3' -54.2 NC_004065.1 + 152918 0.66 0.991746
Target:  5'- aUGUCGGCGGCGcUGcCGccgcggcaaaUCGACGAg -3'
miRNA:   3'- aGCAGCUGCUGCuGCaGC----------AGCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 194360 0.66 0.990629
Target:  5'- cUCG-CGAgCGACGugG-CGaUCGGCGGc -3'
miRNA:   3'- -AGCaGCU-GCUGCugCaGC-AGCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 229677 0.66 0.990629
Target:  5'- gCGUCGG-GGCGcGCGUCcgcUCGGCGAUc -3'
miRNA:   3'- aGCAGCUgCUGC-UGCAGc--AGCUGCUA- -5'
15845 3' -54.2 NC_004065.1 + 32952 0.66 0.990629
Target:  5'- gCGgaugCgGGCGuCGACGUCG-CGGCGGa -3'
miRNA:   3'- aGCa---G-CUGCuGCUGCAGCaGCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 154154 0.66 0.990629
Target:  5'- gCGgUGGCGGCGGCGgCGgCGGCGGc -3'
miRNA:   3'- aGCaGCUGCUGCUGCaGCaGCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 197778 0.66 0.990629
Target:  5'- cCGUcCGAUGAUGGCGgcgaGUcCGACGGc -3'
miRNA:   3'- aGCA-GCUGCUGCUGCag--CA-GCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 141602 0.66 0.990629
Target:  5'- aCG-CGACGGCGGCGggcuccgcUGcCGGCGGUg -3'
miRNA:   3'- aGCaGCUGCUGCUGCa-------GCaGCUGCUA- -5'
15845 3' -54.2 NC_004065.1 + 123565 0.66 0.990511
Target:  5'- cUCGUCGuACGGguCGACGcccagcaUCGaCGACGAg -3'
miRNA:   3'- -AGCAGC-UGCU--GCUGC-------AGCaGCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 115404 0.66 0.989397
Target:  5'- aUCGUCccCGGCGGgGUCGUagcgagGGCGAUa -3'
miRNA:   3'- -AGCAGcuGCUGCUgCAGCAg-----CUGCUA- -5'
15845 3' -54.2 NC_004065.1 + 131473 0.66 0.989397
Target:  5'- aCGaCGAgGACGAUGcCG-CGACGGg -3'
miRNA:   3'- aGCaGCUgCUGCUGCaGCaGCUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.