miRNA display CGI


Results 1 - 20 of 209 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 3' -54.2 NC_004065.1 + 61255 0.66 0.988043
Target:  5'- gCGUCGAaGGCcugcGCGgCGUCGACGGg -3'
miRNA:   3'- aGCAGCUgCUGc---UGCaGCAGCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 98245 0.66 0.986558
Target:  5'- gUGcCGACGACGGC-UCGggaCGGCGGc -3'
miRNA:   3'- aGCaGCUGCUGCUGcAGCa--GCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 134269 0.66 0.986558
Target:  5'- aCGUCGACGA-GAUcaauGUgGUCGGCGu- -3'
miRNA:   3'- aGCAGCUGCUgCUG----CAgCAGCUGCua -5'
15845 3' -54.2 NC_004065.1 + 159907 0.66 0.986558
Target:  5'- uUCGUCGGUGGCGAgaCGUUcauuugauaagGUCGAUGAa -3'
miRNA:   3'- -AGCAGCUGCUGCU--GCAG-----------CAGCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 124911 0.66 0.986558
Target:  5'- gCGUCcaGCGGC-ACGUCGUCGGCc-- -3'
miRNA:   3'- aGCAGc-UGCUGcUGCAGCAGCUGcua -5'
15845 3' -54.2 NC_004065.1 + 24681 0.66 0.986558
Target:  5'- aUCGgaGGCGACGACGcUGcCGAUGAa -3'
miRNA:   3'- -AGCagCUGCUGCUGCaGCaGCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 68302 0.66 0.989397
Target:  5'- --cUCGGCGACGGacuucgagacggUGUCGUCGugGc- -3'
miRNA:   3'- agcAGCUGCUGCU------------GCAGCAGCugCua -5'
15845 3' -54.2 NC_004065.1 + 197697 0.66 0.986558
Target:  5'- cUCGacUCGACGucCGACGcCGUCG-CGGc -3'
miRNA:   3'- -AGC--AGCUGCu-GCUGCaGCAGCuGCUa -5'
15845 3' -54.2 NC_004065.1 + 68673 0.66 0.989397
Target:  5'- -aGUCGGCGuACGA-GUCGUgccaGGCGAa -3'
miRNA:   3'- agCAGCUGC-UGCUgCAGCAg---CUGCUa -5'
15845 3' -54.2 NC_004065.1 + 118095 0.66 0.9879
Target:  5'- cCG-CGACGGCGGCGcccauggcgucucUCGUCGccgcGCGGa -3'
miRNA:   3'- aGCaGCUGCUGCUGC-------------AGCAGC----UGCUa -5'
15845 3' -54.2 NC_004065.1 + 146740 0.66 0.986558
Target:  5'- cCGUCGcccacaucuAUGugGGCGUCGgCGGCGu- -3'
miRNA:   3'- aGCAGC---------UGCugCUGCAGCaGCUGCua -5'
15845 3' -54.2 NC_004065.1 + 58139 0.66 0.984935
Target:  5'- aUCGacgcaGGCGGCGAaauCGUCGcCGGCGGa -3'
miRNA:   3'- -AGCag---CUGCUGCU---GCAGCaGCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 130748 0.66 0.984935
Target:  5'- cUCGUCGugGGCGACcgcgagcaGUacacCGACGAg -3'
miRNA:   3'- -AGCAGCugCUGCUGcag-----CA----GCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 61960 0.66 0.988043
Target:  5'- aUCuUCGAauucucCGAgGACGUCGUCGcucACGAa -3'
miRNA:   3'- -AGcAGCU------GCUgCUGCAGCAGC---UGCUa -5'
15845 3' -54.2 NC_004065.1 + 48095 0.66 0.989397
Target:  5'- gCGgaccugUGGCGGCGGCGguggCGgCGGCGGUg -3'
miRNA:   3'- aGCa-----GCUGCUGCUGCa---GCaGCUGCUA- -5'
15845 3' -54.2 NC_004065.1 + 55871 0.66 0.989397
Target:  5'- -aGUCGAU--CGGCGUCGaUCGGCGu- -3'
miRNA:   3'- agCAGCUGcuGCUGCAGC-AGCUGCua -5'
15845 3' -54.2 NC_004065.1 + 152794 0.66 0.984935
Target:  5'- aCGUCGACuGAccucCGACGaCGagGACGAUu -3'
miRNA:   3'- aGCAGCUG-CU----GCUGCaGCagCUGCUA- -5'
15845 3' -54.2 NC_004065.1 + 27117 0.66 0.989397
Target:  5'- aCGaCGACGAUGACGaCGaugacaaCGACGAg -3'
miRNA:   3'- aGCaGCUGCUGCUGCaGCa------GCUGCUa -5'
15845 3' -54.2 NC_004065.1 + 120482 0.66 0.991746
Target:  5'- gUCGcUGACGACGGUGUCGUgcccgggguaGACGGUg -3'
miRNA:   3'- -AGCaGCUGCUGCUGCAGCAg---------CUGCUA- -5'
15845 3' -54.2 NC_004065.1 + 59146 0.66 0.988043
Target:  5'- gCGaggCGACGACGGCGagaguccgaUCGggcgcgCGGCGAa -3'
miRNA:   3'- aGCa--GCUGCUGCUGC---------AGCa-----GCUGCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.