miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 159689 0.66 0.988473
Target:  5'- ---gCGcUCcUCGcCGCCGUCGCCgCCg -3'
miRNA:   3'- cauaGC-AGcAGUaGCGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 152815 0.66 0.988473
Target:  5'- ---gCGUgGcCAUCGCCGUgcggggCGCCgCCg -3'
miRNA:   3'- cauaGCAgCaGUAGCGGCA------GCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 38162 0.66 0.988473
Target:  5'- gGUAUCGgggCGcCAUCGCggcgauaGUCGCggCCg -3'
miRNA:   3'- -CAUAGCa--GCaGUAGCGg------CAGCGgaGG- -5'
15845 5' -54.3 NC_004065.1 + 30916 0.66 0.988473
Target:  5'- cGUGUcCGUCGaCAUCGCCGggaCGCa--- -3'
miRNA:   3'- -CAUA-GCAGCaGUAGCGGCa--GCGgagg -5'
15845 5' -54.3 NC_004065.1 + 86877 0.66 0.987017
Target:  5'- --cUCGUCGUCAUCaCCGaCGCaggUCg -3'
miRNA:   3'- cauAGCAGCAGUAGcGGCaGCGga-GG- -5'
15845 5' -54.3 NC_004065.1 + 35966 0.66 0.987017
Target:  5'- cUAUCGUCGUUA-CGuCCG-CGCCa-- -3'
miRNA:   3'- cAUAGCAGCAGUaGC-GGCaGCGGagg -5'
15845 5' -54.3 NC_004065.1 + 18498 0.66 0.987017
Target:  5'- --uUCGUCGcguuauUCGUgGUCGUCGgaCUCCu -3'
miRNA:   3'- cauAGCAGC------AGUAgCGGCAGCg-GAGG- -5'
15845 5' -54.3 NC_004065.1 + 109914 0.66 0.987017
Target:  5'- ---cCGgcgaGUCAagCGCCGuacggacauUCGCCUCCg -3'
miRNA:   3'- cauaGCag--CAGUa-GCGGC---------AGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 88441 0.66 0.987017
Target:  5'- -cGUCG-CGUUgGUgGCgGUCGCCUCg -3'
miRNA:   3'- caUAGCaGCAG-UAgCGgCAGCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 78922 0.66 0.987017
Target:  5'- ---cUGcCGUCGUCGCCGagcucgggCGCCaCCa -3'
miRNA:   3'- cauaGCaGCAGUAGCGGCa-------GCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 150234 0.66 0.987017
Target:  5'- ---gCGUCGUCAggaucaGCCG-CuCCUCCu -3'
miRNA:   3'- cauaGCAGCAGUag----CGGCaGcGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 186967 0.66 0.987017
Target:  5'- ----gGUCuGUCG-CGCCGaCGCCUCg -3'
miRNA:   3'- cauagCAG-CAGUaGCGGCaGCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 165807 0.66 0.985424
Target:  5'- -gGUC-UUGUCcUCGCCGccgacacUGCCUCCg -3'
miRNA:   3'- caUAGcAGCAGuAGCGGCa------GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 128158 0.66 0.985424
Target:  5'- -cGUCGUCGUCugcggCGgCGauagCGCCcCCg -3'
miRNA:   3'- caUAGCAGCAGua---GCgGCa---GCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 186727 0.66 0.985424
Target:  5'- ---aCGUCGUUuUUGUCGUCGUCUg- -3'
miRNA:   3'- cauaGCAGCAGuAGCGGCAGCGGAgg -5'
15845 5' -54.3 NC_004065.1 + 125114 0.66 0.985424
Target:  5'- cGUGUaCGcCGcCGgcaccaccgCGCCGUCGCCcagCCg -3'
miRNA:   3'- -CAUA-GCaGCaGUa--------GCGGCAGCGGa--GG- -5'
15845 5' -54.3 NC_004065.1 + 193311 0.66 0.985424
Target:  5'- ------cCGUCG-CGCCGuUCGCCUCg -3'
miRNA:   3'- cauagcaGCAGUaGCGGC-AGCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 26347 0.66 0.985424
Target:  5'- -cGUCGUCGUCAUCGgCGcUgGCgaCg -3'
miRNA:   3'- caUAGCAGCAGUAGCgGC-AgCGgaGg -5'
15845 5' -54.3 NC_004065.1 + 44081 0.66 0.985256
Target:  5'- aGUGguaGUUGUgAUCGCCGuggagggUCGCCaCCg -3'
miRNA:   3'- -CAUag-CAGCAgUAGCGGC-------AGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 209917 0.66 0.983685
Target:  5'- ----gGUCGUCAgagCGcCCGUCGUUcCCg -3'
miRNA:   3'- cauagCAGCAGUa--GC-GGCAGCGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.