miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 125114 0.66 0.985424
Target:  5'- cGUGUaCGcCGcCGgcaccaccgCGCCGUCGCCcagCCg -3'
miRNA:   3'- -CAUA-GCaGCaGUa--------GCGGCAGCGGa--GG- -5'
15845 5' -54.3 NC_004065.1 + 29199 0.66 0.981794
Target:  5'- ---cCGg-GUCGUCcCCGUCGCC-CCg -3'
miRNA:   3'- cauaGCagCAGUAGcGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 153013 0.66 0.981794
Target:  5'- ----aGUCGagGUCGCagcaCGcCGCCUCCu -3'
miRNA:   3'- cauagCAGCagUAGCG----GCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 30916 0.66 0.988473
Target:  5'- cGUGUcCGUCGaCAUCGCCGggaCGCa--- -3'
miRNA:   3'- -CAUA-GCAGCaGUAGCGGCa--GCGgagg -5'
15845 5' -54.3 NC_004065.1 + 152815 0.66 0.988473
Target:  5'- ---gCGUgGcCAUCGCCGUgcggggCGCCgCCg -3'
miRNA:   3'- cauaGCAgCaGUAGCGGCA------GCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 193311 0.66 0.985424
Target:  5'- ------cCGUCG-CGCCGuUCGCCUCg -3'
miRNA:   3'- cauagcaGCAGUaGCGGC-AGCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 52296 0.66 0.981794
Target:  5'- -gGUCGgCGcacacucucCAUCGCUGUCcCCUCCa -3'
miRNA:   3'- caUAGCaGCa--------GUAGCGGCAGcGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 150234 0.66 0.987017
Target:  5'- ---gCGUCGUCAggaucaGCCG-CuCCUCCu -3'
miRNA:   3'- cauaGCAGCAGUag----CGGCaGcGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 149130 0.66 0.983685
Target:  5'- gGUGUCGUU-UCGUCGa-GUCGCCUg- -3'
miRNA:   3'- -CAUAGCAGcAGUAGCggCAGCGGAgg -5'
15845 5' -54.3 NC_004065.1 + 96628 0.66 0.981794
Target:  5'- --uUCGUCcUCGUCGCCGgcggUCGCgagCUCUu -3'
miRNA:   3'- cauAGCAGcAGUAGCGGC----AGCG---GAGG- -5'
15845 5' -54.3 NC_004065.1 + 34997 0.66 0.981794
Target:  5'- --cUCGaCGUCGUCGCCcGUCGUUggCg -3'
miRNA:   3'- cauAGCaGCAGUAGCGG-CAGCGGagG- -5'
15845 5' -54.3 NC_004065.1 + 26347 0.66 0.985424
Target:  5'- -cGUCGUCGUCAUCGgCGcUgGCgaCg -3'
miRNA:   3'- caUAGCAGCAGUAGCgGC-AgCGgaGg -5'
15845 5' -54.3 NC_004065.1 + 159689 0.66 0.988473
Target:  5'- ---gCGcUCcUCGcCGCCGUCGCCgCCg -3'
miRNA:   3'- cauaGC-AGcAGUaGCGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 118054 0.66 0.981794
Target:  5'- --cUCGUCGUaCA-CGUCuUCGuCCUCCa -3'
miRNA:   3'- cauAGCAGCA-GUaGCGGcAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 102410 0.66 0.981794
Target:  5'- --cUCGUCGaCGgacgggaggaGCCGgCGCCUCCc -3'
miRNA:   3'- cauAGCAGCaGUag--------CGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 35671 0.66 0.982569
Target:  5'- -cAUCGUCGcgaaggaacaccucaUCgagGUCGUCGUCGCUgaugaUCCg -3'
miRNA:   3'- caUAGCAGC---------------AG---UAGCGGCAGCGG-----AGG- -5'
15845 5' -54.3 NC_004065.1 + 1177 0.66 0.981794
Target:  5'- uGUGUCGUCGg---CGCCGcUGCCg-- -3'
miRNA:   3'- -CAUAGCAGCaguaGCGGCaGCGGagg -5'
15845 5' -54.3 NC_004065.1 + 114946 0.66 0.981794
Target:  5'- -cAUCaUCaGUCggCGCCGcCGgCCUCCa -3'
miRNA:   3'- caUAGcAG-CAGuaGCGGCaGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 110870 0.66 0.981195
Target:  5'- ---cCGUCGccaugccgacuucaUCGUgCGCCGUCGauuaCUCCu -3'
miRNA:   3'- cauaGCAGC--------------AGUA-GCGGCAGCg---GAGG- -5'
15845 5' -54.3 NC_004065.1 + 88441 0.66 0.987017
Target:  5'- -cGUCG-CGUUgGUgGCgGUCGCCUCg -3'
miRNA:   3'- caUAGCaGCAG-UAgCGgCAGCGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.