miRNA display CGI


Results 21 - 40 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 30916 0.66 0.988473
Target:  5'- cGUGUcCGUCGaCAUCGCCGggaCGCa--- -3'
miRNA:   3'- -CAUA-GCAGCaGUAGCGGCa--GCGgagg -5'
15845 5' -54.3 NC_004065.1 + 44081 0.66 0.985256
Target:  5'- aGUGguaGUUGUgAUCGCCGuggagggUCGCCaCCg -3'
miRNA:   3'- -CAUag-CAGCAgUAGCGGC-------AGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 114946 0.66 0.981794
Target:  5'- -cAUCaUCaGUCggCGCCGcCGgCCUCCa -3'
miRNA:   3'- caUAGcAG-CAGuaGCGGCaGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 193311 0.66 0.985424
Target:  5'- ------cCGUCG-CGCCGuUCGCCUCg -3'
miRNA:   3'- cauagcaGCAGUaGCGGC-AGCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 150234 0.66 0.987017
Target:  5'- ---gCGUCGUCAggaucaGCCG-CuCCUCCu -3'
miRNA:   3'- cauaGCAGCAGUag----CGGCaGcGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 96628 0.66 0.981794
Target:  5'- --uUCGUCcUCGUCGCCGgcggUCGCgagCUCUu -3'
miRNA:   3'- cauAGCAGcAGUAGCGGC----AGCG---GAGG- -5'
15845 5' -54.3 NC_004065.1 + 149130 0.66 0.983685
Target:  5'- gGUGUCGUU-UCGUCGa-GUCGCCUg- -3'
miRNA:   3'- -CAUAGCAGcAGUAGCggCAGCGGAgg -5'
15845 5' -54.3 NC_004065.1 + 125114 0.66 0.985424
Target:  5'- cGUGUaCGcCGcCGgcaccaccgCGCCGUCGCCcagCCg -3'
miRNA:   3'- -CAUA-GCaGCaGUa--------GCGGCAGCGGa--GG- -5'
15845 5' -54.3 NC_004065.1 + 152815 0.66 0.988473
Target:  5'- ---gCGUgGcCAUCGCCGUgcggggCGCCgCCg -3'
miRNA:   3'- cauaGCAgCaGUAGCGGCA------GCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 18498 0.66 0.987017
Target:  5'- --uUCGUCGcguuauUCGUgGUCGUCGgaCUCCu -3'
miRNA:   3'- cauAGCAGC------AGUAgCGGCAGCg-GAGG- -5'
15845 5' -54.3 NC_004065.1 + 88441 0.66 0.987017
Target:  5'- -cGUCG-CGUUgGUgGCgGUCGCCUCg -3'
miRNA:   3'- caUAGCaGCAG-UAgCGgCAGCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 159689 0.66 0.988473
Target:  5'- ---gCGcUCcUCGcCGCCGUCGCCgCCg -3'
miRNA:   3'- cauaGC-AGcAGUaGCGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 102410 0.66 0.981794
Target:  5'- --cUCGUCGaCGgacgggaggaGCCGgCGCCUCCc -3'
miRNA:   3'- cauAGCAGCaGUag--------CGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 86877 0.66 0.987017
Target:  5'- --cUCGUCGUCAUCaCCGaCGCaggUCg -3'
miRNA:   3'- cauAGCAGCAGUAGcGGCaGCGga-GG- -5'
15845 5' -54.3 NC_004065.1 + 78922 0.66 0.987017
Target:  5'- ---cUGcCGUCGUCGCCGagcucgggCGCCaCCa -3'
miRNA:   3'- cauaGCaGCAGUAGCGGCa-------GCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 192769 0.67 0.9698
Target:  5'- -gGUgGUCGUCGuguccgguuuUCGCUGcuUCGCCUgCa -3'
miRNA:   3'- caUAgCAGCAGU----------AGCGGC--AGCGGAgG- -5'
15845 5' -54.3 NC_004065.1 + 41361 0.67 0.979742
Target:  5'- ---cCGUCGUCuccCGCCGcgCGcCCUCg -3'
miRNA:   3'- cauaGCAGCAGua-GCGGCa-GC-GGAGg -5'
15845 5' -54.3 NC_004065.1 + 109912 0.67 0.972559
Target:  5'- cGgcUCGUCcgccgCGgcCGCCGUCGCgUCCc -3'
miRNA:   3'- -CauAGCAGca---GUa-GCGGCAGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 149622 0.67 0.979742
Target:  5'- uUGUCGUccacCGUCAccggCGCCGUCGgCaggCCc -3'
miRNA:   3'- cAUAGCA----GCAGUa---GCGGCAGCgGa--GG- -5'
15845 5' -54.3 NC_004065.1 + 146455 0.67 0.966847
Target:  5'- --uUCccCGcCGUCGCCGUCuaCUCCg -3'
miRNA:   3'- cauAGcaGCaGUAGCGGCAGcgGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.