miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 133494 0.67 0.977524
Target:  5'- --cUCGUCcagcuccUCGgacUCGUCGUCGuCCUCCg -3'
miRNA:   3'- cauAGCAGc------AGU---AGCGGCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 210972 0.67 0.97611
Target:  5'- --cUCGUCGUCAcagaugugggccacCGCCGcCGUCgUCCa -3'
miRNA:   3'- cauAGCAGCAGUa-------------GCGGCaGCGG-AGG- -5'
15845 5' -54.3 NC_004065.1 + 202743 0.67 0.972559
Target:  5'- ---gCGUCGUCGgcggCGCCGcCgGUCUCUu -3'
miRNA:   3'- cauaGCAGCAGUa---GCGGCaG-CGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 194509 0.67 0.977524
Target:  5'- ---cCGUCccCAcCuCCGUCGCCUCCa -3'
miRNA:   3'- cauaGCAGcaGUaGcGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 91472 0.68 0.953007
Target:  5'- -cGUCGcCGUCAgucCGCCGcCGCUcgugCCg -3'
miRNA:   3'- caUAGCaGCAGUa--GCGGCaGCGGa---GG- -5'
15845 5' -54.3 NC_004065.1 + 210875 0.68 0.953007
Target:  5'- -cAUCGgcagCAUCGUCGUCGuCCUCg -3'
miRNA:   3'- caUAGCagcaGUAGCGGCAGC-GGAGg -5'
15845 5' -54.3 NC_004065.1 + 169464 0.68 0.953007
Target:  5'- cGUGUgCGgaccCGgCGUCuCCGUCGUCUCCg -3'
miRNA:   3'- -CAUA-GCa---GCaGUAGcGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 117998 0.68 0.949017
Target:  5'- uUGUCGUCGUCGUCcUCGUCGggcgagaaaCUCUu -3'
miRNA:   3'- cAUAGCAGCAGUAGcGGCAGCg--------GAGG- -5'
15845 5' -54.3 NC_004065.1 + 154767 0.68 0.956413
Target:  5'- ---aCGUCGUCGaCGagcucuaCUGUCGCUUCCu -3'
miRNA:   3'- cauaGCAGCAGUaGC-------GGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 76676 0.68 0.960343
Target:  5'- -gAUCG-CGUCggCGCCGcCGUCcCCg -3'
miRNA:   3'- caUAGCaGCAGuaGCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 165085 0.68 0.963697
Target:  5'- ---gCGguggGUCAguaggCGCCGUCGUCUCUg -3'
miRNA:   3'- cauaGCag--CAGUa----GCGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 146786 0.68 0.960343
Target:  5'- -cAUCGUCGaucUCAgguUCGCCGUCcugcggauguGCCUgCCc -3'
miRNA:   3'- caUAGCAGC---AGU---AGCGGCAG----------CGGA-GG- -5'
15845 5' -54.3 NC_004065.1 + 88571 0.68 0.960343
Target:  5'- aUGUCGUCGaUCucggggauGUCGCCcucGUCGCggccCUCCa -3'
miRNA:   3'- cAUAGCAGC-AG--------UAGCGG---CAGCG----GAGG- -5'
15845 5' -54.3 NC_004065.1 + 189796 0.68 0.956781
Target:  5'- aUGUCGUCGUCGUCcaccCCGUUG-UUCUg -3'
miRNA:   3'- cAUAGCAGCAGUAGc---GGCAGCgGAGG- -5'
15845 5' -54.3 NC_004065.1 + 40402 0.68 0.956781
Target:  5'- ---cCGcCGUCAUCGUCGUCuUCUUCa -3'
miRNA:   3'- cauaGCaGCAGUAGCGGCAGcGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 173612 0.68 0.953007
Target:  5'- -cGUCcUCGUCcaccuccuauGUCGCCG-CGCgUCCg -3'
miRNA:   3'- caUAGcAGCAG----------UAGCGGCaGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 91788 0.68 0.953007
Target:  5'- -gAUCGUCGUC--CGCCauggCGaCCUCCc -3'
miRNA:   3'- caUAGCAGCAGuaGCGGca--GC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 206560 0.68 0.953007
Target:  5'- ---gCGUCGUCAUCGUCGcgaGCCg-- -3'
miRNA:   3'- cauaGCAGCAGUAGCGGCag-CGGagg -5'
15845 5' -54.3 NC_004065.1 + 86305 0.68 0.963697
Target:  5'- -aGUCGUC-UCGcUCGCCGgCGCCgaCCu -3'
miRNA:   3'- caUAGCAGcAGU-AGCGGCaGCGGa-GG- -5'
15845 5' -54.3 NC_004065.1 + 85558 0.68 0.963697
Target:  5'- ---aCGUCGuguUCggCGCCaugGUCGCCUUCg -3'
miRNA:   3'- cauaGCAGC---AGuaGCGG---CAGCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.