miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 185365 0.73 0.761956
Target:  5'- --uUCGUCGcCGacgaCGCCGUCGUCUUCg -3'
miRNA:   3'- cauAGCAGCaGUa---GCGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 204530 0.73 0.789116
Target:  5'- ---cCGUCGUgGUCGCCaGaCGCCUCg -3'
miRNA:   3'- cauaGCAGCAgUAGCGG-CaGCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 181421 0.73 0.761956
Target:  5'- -cGUCGacggUGUCAUCGCCa--GCCUCCu -3'
miRNA:   3'- caUAGCa---GCAGUAGCGGcagCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 161484 0.73 0.761956
Target:  5'- ---aCGcCGUCAccucCGCCGcCGCCUCCu -3'
miRNA:   3'- cauaGCaGCAGUa---GCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 170250 0.73 0.771129
Target:  5'- gGUAUCGUgGcCGUgGCCGcCGCCgCCa -3'
miRNA:   3'- -CAUAGCAgCaGUAgCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 112746 0.73 0.789116
Target:  5'- -gAUCGUCcUgAUCGCCGgcucgugCGCCUCUu -3'
miRNA:   3'- caUAGCAGcAgUAGCGGCa------GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 207672 0.73 0.789116
Target:  5'- ---cUGUCGUCGUUGCCGUUcucaagaucuugGCCUCg -3'
miRNA:   3'- cauaGCAGCAGUAGCGGCAG------------CGGAGg -5'
15845 5' -54.3 NC_004065.1 + 36380 0.73 0.797914
Target:  5'- cUAUCGUCGcUC-UCGCUGcCGCCgCCa -3'
miRNA:   3'- cAUAGCAGC-AGuAGCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 66567 0.73 0.797914
Target:  5'- -aGUCGUUcUCGUCGCUGgcgagCGCCUgCCg -3'
miRNA:   3'- caUAGCAGcAGUAGCGGCa----GCGGA-GG- -5'
15845 5' -54.3 NC_004065.1 + 94870 0.73 0.789116
Target:  5'- --cUCGUCGUCAUCGacguccCCGUCGUCaUCa -3'
miRNA:   3'- cauAGCAGCAGUAGC------GGCAGCGG-AGg -5'
15845 5' -54.3 NC_004065.1 + 130652 0.72 0.823429
Target:  5'- -aGUCGggacaGUCggCGCCGUCGCUgCCa -3'
miRNA:   3'- caUAGCag---CAGuaGCGGCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 17706 0.72 0.815078
Target:  5'- ---cCGUCGUCGUCGCUuuguuguugCGCCUCa -3'
miRNA:   3'- cauaGCAGCAGUAGCGGca-------GCGGAGg -5'
15845 5' -54.3 NC_004065.1 + 111724 0.72 0.839632
Target:  5'- -------aGgggCAUCGCCGUCGCCUUCg -3'
miRNA:   3'- cauagcagCa--GUAGCGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 205343 0.72 0.815078
Target:  5'- --uUCaUCGgCAgCGUCGUCGCCUCCg -3'
miRNA:   3'- cauAGcAGCaGUaGCGGCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 77341 0.72 0.806571
Target:  5'- -cAUCGUUaUCAUCGCUGUC-CCUCg -3'
miRNA:   3'- caUAGCAGcAGUAGCGGCAGcGGAGg -5'
15845 5' -54.3 NC_004065.1 + 170885 0.72 0.823429
Target:  5'- --cUCGcCGUCGUCGCC-UCGCgCUCg -3'
miRNA:   3'- cauAGCaGCAGUAGCGGcAGCG-GAGg -5'
15845 5' -54.3 NC_004065.1 + 78894 0.72 0.839632
Target:  5'- -cAUCG-CGgCGUUGCCGcCGCCUUCg -3'
miRNA:   3'- caUAGCaGCaGUAGCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 217426 0.71 0.855125
Target:  5'- -----aUCG-CAUCGCaCGUCGUCUCCg -3'
miRNA:   3'- cauagcAGCaGUAGCG-GCAGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 47675 0.71 0.883784
Target:  5'- -aGUCGUCGUCGgaaUCGUCGUCcaccgaCCUCa -3'
miRNA:   3'- caUAGCAGCAGU---AGCGGCAGc-----GGAGg -5'
15845 5' -54.3 NC_004065.1 + 32807 0.71 0.883784
Target:  5'- uUGUCGUCGUCcUCguaGCCGUCggGCCgcucgUCCg -3'
miRNA:   3'- cAUAGCAGCAGuAG---CGGCAG--CGG-----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.