Results 41 - 60 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15845 | 5' | -54.3 | NC_004065.1 | + | 217426 | 0.71 | 0.855125 |
Target: 5'- -----aUCG-CAUCGCaCGUCGUCUCCg -3' miRNA: 3'- cauagcAGCaGUAGCG-GCAGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 32807 | 0.71 | 0.883784 |
Target: 5'- uUGUCGUCGUCcUCguaGCCGUCggGCCgcucgUCCg -3' miRNA: 3'- cAUAGCAGCAGuAG---CGGCAG--CGG-----AGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 178436 | 0.71 | 0.862588 |
Target: 5'- -cAUCuUCGggGUCGCCGaagaguggcgguUCGCCUCCa -3' miRNA: 3'- caUAGcAGCagUAGCGGC------------AGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 141118 | 0.71 | 0.862588 |
Target: 5'- --cUCGUcucCGUCAgcuUCGCCGUCGagaaguaCUCCa -3' miRNA: 3'- cauAGCA---GCAGU---AGCGGCAGCg------GAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 77364 | 0.71 | 0.855125 |
Target: 5'- ---gCGcCGUCGcCGCCGUUGgCUCCg -3' miRNA: 3'- cauaGCaGCAGUaGCGGCAGCgGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 47675 | 0.71 | 0.883784 |
Target: 5'- -aGUCGUCGUCGgaaUCGUCGUCcaccgaCCUCa -3' miRNA: 3'- caUAGCAGCAGU---AGCGGCAGc-----GGAGg -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 51883 | 0.71 | 0.883784 |
Target: 5'- uUGUCGUUGUCGaccCGCCaUCGCCggcuUCCu -3' miRNA: 3'- cAUAGCAGCAGUa--GCGGcAGCGG----AGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 183113 | 0.71 | 0.876923 |
Target: 5'- -cGUCGUCGUgaccCAUCGCgGcCcCCUCCa -3' miRNA: 3'- caUAGCAGCA----GUAGCGgCaGcGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 124573 | 0.7 | 0.909089 |
Target: 5'- --uUCGcCGUCAcguucUCGuCCGUCGCCacgUCCc -3' miRNA: 3'- cauAGCaGCAGU-----AGC-GGCAGCGG---AGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 89869 | 0.7 | 0.890434 |
Target: 5'- gGUAUCGUUGUCGacggCGCCaUCGUCggCCc -3' miRNA: 3'- -CAUAGCAGCAGUa---GCGGcAGCGGa-GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 73976 | 0.7 | 0.889779 |
Target: 5'- -gGUCGagGUCGUCGCgGUCcaggcagGUCUCCc -3' miRNA: 3'- caUAGCagCAGUAGCGgCAG-------CGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 172217 | 0.7 | 0.890434 |
Target: 5'- -gAUC-UCGUCGUCcCCGUCGgguCCUCCc -3' miRNA: 3'- caUAGcAGCAGUAGcGGCAGC---GGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 110958 | 0.7 | 0.890434 |
Target: 5'- -cAUCcUCGUCAccuccaccuUCGCCGUCGUCagCCu -3' miRNA: 3'- caUAGcAGCAGU---------AGCGGCAGCGGa-GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 192232 | 0.7 | 0.890434 |
Target: 5'- -cAUCGUCGUCGguuCCGUCGaCCUUUa -3' miRNA: 3'- caUAGCAGCAGUagcGGCAGC-GGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 167686 | 0.7 | 0.914866 |
Target: 5'- ---gCGUCaGUgAUCGUCGcCGUCUCCg -3' miRNA: 3'- cauaGCAG-CAgUAGCGGCaGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 43688 | 0.7 | 0.896871 |
Target: 5'- ---cCGUCGUCcgCGCCGUCGaagaUCg -3' miRNA: 3'- cauaGCAGCAGuaGCGGCAGCgg--AGg -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 51513 | 0.7 | 0.90309 |
Target: 5'- cUGUCGUagGcCAUgacgaCGCCGUCGCgUCCg -3' miRNA: 3'- cAUAGCAg-CaGUA-----GCGGCAGCGgAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 98879 | 0.7 | 0.90309 |
Target: 5'- -gGUCGUCGUCGcccacgcgcUCGUCGaCGCgUCUa -3' miRNA: 3'- caUAGCAGCAGU---------AGCGGCaGCGgAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 196087 | 0.7 | 0.90309 |
Target: 5'- cGUGUcCGUCGaaUCcccuGUUGUCGUCGuCCUCCu -3' miRNA: 3'- -CAUA-GCAGC--AG----UAGCGGCAGC-GGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 97192 | 0.7 | 0.896871 |
Target: 5'- --cUCGUCGUCG-CGCUG-CGCCUg- -3' miRNA: 3'- cauAGCAGCAGUaGCGGCaGCGGAgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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