miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 167686 0.7 0.914866
Target:  5'- ---gCGUCaGUgAUCGUCGcCGUCUCCg -3'
miRNA:   3'- cauaGCAG-CAgUAGCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 43278 0.69 0.920418
Target:  5'- -aGUCGUCGUCGUCGaCC--CGCgaCCa -3'
miRNA:   3'- caUAGCAGCAGUAGC-GGcaGCGgaGG- -5'
15845 5' -54.3 NC_004065.1 + 90152 0.69 0.930849
Target:  5'- --cUCGUcCGUCcugcCGCCGgcuccgcCGCCUCCg -3'
miRNA:   3'- cauAGCA-GCAGua--GCGGCa------GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 88264 0.69 0.930849
Target:  5'- --cUCGUCGUCccccCGCaCGUCGUCgCCg -3'
miRNA:   3'- cauAGCAGCAGua--GCG-GCAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 126897 0.69 0.930849
Target:  5'- -gAUCG-CGUgAgcCGCCGUCGCCaacgCCg -3'
miRNA:   3'- caUAGCaGCAgUa-GCGGCAGCGGa---GG- -5'
15845 5' -54.3 NC_004065.1 + 58039 0.69 0.927814
Target:  5'- -gAUgGUCGUCGUucacgacgaccccucCGCCGcCGCCgCCg -3'
miRNA:   3'- caUAgCAGCAGUA---------------GCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 42783 0.69 0.920418
Target:  5'- --cUCGUCGUCGUC-CCuUCGUCaUCCu -3'
miRNA:   3'- cauAGCAGCAGUAGcGGcAGCGG-AGG- -5'
15845 5' -54.3 NC_004065.1 + 40990 0.69 0.920418
Target:  5'- -aAUCGUCGccguagacggcgUCGUCGaacaCGUUGaCCUCCg -3'
miRNA:   3'- caUAGCAGC------------AGUAGCg---GCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 24591 0.69 0.920418
Target:  5'- cGUGUCGUCGcCGccacCGCCGcCGCCg-- -3'
miRNA:   3'- -CAUAGCAGCaGUa---GCGGCaGCGGagg -5'
15845 5' -54.3 NC_004065.1 + 27411 0.69 0.944809
Target:  5'- -cGUCGUCGacuccUCAUCGCacccaGCCUCUg -3'
miRNA:   3'- caUAGCAGC-----AGUAGCGgcag-CGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 140038 0.69 0.944809
Target:  5'- ---cCGUCGgguucgcuccCGUCGUCGUC-CCUCCg -3'
miRNA:   3'- cauaGCAGCa---------GUAGCGGCAGcGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 95161 0.69 0.946518
Target:  5'- --cUCGUCGcCGcCGCCGUgcaggguccagggccCGUCUCCg -3'
miRNA:   3'- cauAGCAGCaGUaGCGGCA---------------GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 8039 0.69 0.935726
Target:  5'- gGUAUCGUCuUCGgguccCGaCGUCGCCUaCCu -3'
miRNA:   3'- -CAUAGCAGcAGUa----GCgGCAGCGGA-GG- -5'
15845 5' -54.3 NC_004065.1 + 203272 0.69 0.920418
Target:  5'- -cGUCGUCGUCGUCGUCcacgacgacguGUCGCgaaUCg -3'
miRNA:   3'- caUAGCAGCAGUAGCGG-----------CAGCGg--AGg -5'
15845 5' -54.3 NC_004065.1 + 83314 0.69 0.940379
Target:  5'- --cUCGUCGUCGagcgCGgCGUCGCC-Ca -3'
miRNA:   3'- cauAGCAGCAGUa---GCgGCAGCGGaGg -5'
15845 5' -54.3 NC_004065.1 + 89243 0.69 0.935726
Target:  5'- -cGUCGcgucucucUCGUCAUCGUCGUCcCCaCCa -3'
miRNA:   3'- caUAGC--------AGCAGUAGCGGCAGcGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 154216 0.69 0.935249
Target:  5'- cUGUCGUCGugccaggugccUCGccgccgcucccccUCGCCGaccgcCGCCUCCg -3'
miRNA:   3'- cAUAGCAGC-----------AGU-------------AGCGGCa----GCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 120774 0.69 0.946518
Target:  5'- -aGUCGUCaUCGUcaccgacgccgcuacCGCCGcCGUCUCCc -3'
miRNA:   3'- caUAGCAGcAGUA---------------GCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 30810 0.69 0.944809
Target:  5'- cUGUCGUCacCGUCGCgGUgCGCgUCCu -3'
miRNA:   3'- cAUAGCAGcaGUAGCGgCA-GCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 88571 0.68 0.960343
Target:  5'- aUGUCGUCGaUCucggggauGUCGCCcucGUCGCggccCUCCa -3'
miRNA:   3'- cAUAGCAGC-AG--------UAGCGG---CAGCG----GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.