Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15845 | 5' | -54.3 | NC_004065.1 | + | 210875 | 0.68 | 0.953007 |
Target: 5'- -cAUCGgcagCAUCGUCGUCGuCCUCg -3' miRNA: 3'- caUAGCagcaGUAGCGGCAGC-GGAGg -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 165085 | 0.68 | 0.963697 |
Target: 5'- ---gCGguggGUCAguaggCGCCGUCGUCUCUg -3' miRNA: 3'- cauaGCag--CAGUa----GCGGCAGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 154767 | 0.68 | 0.956413 |
Target: 5'- ---aCGUCGUCGaCGagcucuaCUGUCGCUUCCu -3' miRNA: 3'- cauaGCAGCAGUaGC-------GGCAGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 146786 | 0.68 | 0.960343 |
Target: 5'- -cAUCGUCGaucUCAgguUCGCCGUCcugcggauguGCCUgCCc -3' miRNA: 3'- caUAGCAGC---AGU---AGCGGCAG----------CGGA-GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 76676 | 0.68 | 0.960343 |
Target: 5'- -gAUCG-CGUCggCGCCGcCGUCcCCg -3' miRNA: 3'- caUAGCaGCAGuaGCGGCaGCGGaGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 189796 | 0.68 | 0.956781 |
Target: 5'- aUGUCGUCGUCGUCcaccCCGUUG-UUCUg -3' miRNA: 3'- cAUAGCAGCAGUAGc---GGCAGCgGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 40402 | 0.68 | 0.956781 |
Target: 5'- ---cCGcCGUCAUCGUCGUCuUCUUCa -3' miRNA: 3'- cauaGCaGCAGUAGCGGCAGcGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 91788 | 0.68 | 0.953007 |
Target: 5'- -gAUCGUCGUC--CGCCauggCGaCCUCCc -3' miRNA: 3'- caUAGCAGCAGuaGCGGca--GC-GGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 86305 | 0.68 | 0.963697 |
Target: 5'- -aGUCGUC-UCGcUCGCCGgCGCCgaCCu -3' miRNA: 3'- caUAGCAGcAGU-AGCGGCaGCGGa-GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 166985 | 0.68 | 0.960343 |
Target: 5'- -gAUCGUCGccUCGcgCGCCGgacaGCuCUCCg -3' miRNA: 3'- caUAGCAGC--AGUa-GCGGCag--CG-GAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 91472 | 0.68 | 0.953007 |
Target: 5'- -cGUCGcCGUCAgucCGCCGcCGCUcgugCCg -3' miRNA: 3'- caUAGCaGCAGUa--GCGGCaGCGGa---GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 173612 | 0.68 | 0.953007 |
Target: 5'- -cGUCcUCGUCcaccuccuauGUCGCCG-CGCgUCCg -3' miRNA: 3'- caUAGcAGCAG----------UAGCGGCaGCGgAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 206560 | 0.68 | 0.953007 |
Target: 5'- ---gCGUCGUCAUCGUCGcgaGCCg-- -3' miRNA: 3'- cauaGCAGCAGUAGCGGCag-CGGagg -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 85558 | 0.68 | 0.963697 |
Target: 5'- ---aCGUCGuguUCggCGCCaugGUCGCCUUCg -3' miRNA: 3'- cauaGCAGC---AGuaGCGG---CAGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 169464 | 0.68 | 0.953007 |
Target: 5'- cGUGUgCGgaccCGgCGUCuCCGUCGUCUCCg -3' miRNA: 3'- -CAUA-GCa---GCaGUAGcGGCAGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 117998 | 0.68 | 0.949017 |
Target: 5'- uUGUCGUCGUCGUCcUCGUCGggcgagaaaCUCUu -3' miRNA: 3'- cAUAGCAGCAGUAGcGGCAGCg--------GAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 81150 | 0.67 | 0.972559 |
Target: 5'- --uUCGUCccccUCGcccccCGCCGcCGCCUCCu -3' miRNA: 3'- cauAGCAGc---AGUa----GCGGCaGCGGAGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 59684 | 0.67 | 0.972292 |
Target: 5'- --cUCGUCGUCcgaGUCGUCGUagaagggCGCCgagcggCCg -3' miRNA: 3'- cauAGCAGCAG---UAGCGGCA-------GCGGa-----GG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 195431 | 0.67 | 0.972292 |
Target: 5'- ---cCGcCG-CGUCGCCGUCGUCggacaggUCCg -3' miRNA: 3'- cauaGCaGCaGUAGCGGCAGCGG-------AGG- -5' |
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15845 | 5' | -54.3 | NC_004065.1 | + | 149239 | 0.67 | 0.9698 |
Target: 5'- ---cCGcCGcCGcCGCCGUCGCCUgCu -3' miRNA: 3'- cauaGCaGCaGUaGCGGCAGCGGAgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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