miRNA display CGI


Results 101 - 120 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15845 5' -54.3 NC_004065.1 + 82092 0.67 0.966847
Target:  5'- aUGUCGgCGaCGUCGCaGUCGaUCUCCa -3'
miRNA:   3'- cAUAGCaGCaGUAGCGgCAGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 116257 0.67 0.966847
Target:  5'- -aGUCgGUCGUCugcCGCCGcggcugucccUCGgCCUCCu -3'
miRNA:   3'- caUAG-CAGCAGua-GCGGC----------AGC-GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 17680 0.67 0.975132
Target:  5'- -gGUCGUcCGUCG-CGCCaUCGCCg-- -3'
miRNA:   3'- caUAGCA-GCAGUaGCGGcAGCGGagg -5'
15845 5' -54.3 NC_004065.1 + 59684 0.67 0.972292
Target:  5'- --cUCGUCGUCcgaGUCGUCGUagaagggCGCCgagcggCCg -3'
miRNA:   3'- cauAGCAGCAG---UAGCGGCA-------GCGGa-----GG- -5'
15845 5' -54.3 NC_004065.1 + 76806 0.67 0.975132
Target:  5'- cUAUCacCGuUCAUCGCCGUCGCggcgCUCg -3'
miRNA:   3'- cAUAGcaGC-AGUAGCGGCAGCG----GAGg -5'
15845 5' -54.3 NC_004065.1 + 41361 0.67 0.979742
Target:  5'- ---cCGUCGUCuccCGCCGcgCGcCCUCg -3'
miRNA:   3'- cauaGCAGCAGua-GCGGCa-GC-GGAGg -5'
15845 5' -54.3 NC_004065.1 + 118302 0.67 0.979742
Target:  5'- -cAUCGUCcUCAUCGgcguucUCGUCGCCagCg -3'
miRNA:   3'- caUAGCAGcAGUAGC------GGCAGCGGagG- -5'
15845 5' -54.3 NC_004065.1 + 62014 0.67 0.979528
Target:  5'- --uUCGUCGUCucccccgGUCGCCaUCGCUgCUg -3'
miRNA:   3'- cauAGCAGCAG-------UAGCGGcAGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 201066 0.67 0.977524
Target:  5'- ---gUGUCGUag-CGCCc-CGCCUCCg -3'
miRNA:   3'- cauaGCAGCAguaGCGGcaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 159897 0.67 0.9698
Target:  5'- uGUGUuucUGUCGaUCggCGCCGcCGCCgCCg -3'
miRNA:   3'- -CAUA---GCAGC-AGuaGCGGCaGCGGaGG- -5'
15845 5' -54.3 NC_004065.1 + 192769 0.67 0.9698
Target:  5'- -gGUgGUCGUCGuguccgguuuUCGCUGcuUCGCCUgCa -3'
miRNA:   3'- caUAgCAGCAGU----------AGCGGC--AGCGGAgG- -5'
15845 5' -54.3 NC_004065.1 + 202743 0.67 0.972559
Target:  5'- ---gCGUCGUCGgcggCGCCGcCgGUCUCUu -3'
miRNA:   3'- cauaGCAGCAGUa---GCGGCaG-CGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 149239 0.67 0.9698
Target:  5'- ---cCGcCGcCGcCGCCGUCGCCUgCu -3'
miRNA:   3'- cauaGCaGCaGUaGCGGCAGCGGAgG- -5'
15845 5' -54.3 NC_004065.1 + 195431 0.67 0.972292
Target:  5'- ---cCGcCG-CGUCGCCGUCGUCggacaggUCCg -3'
miRNA:   3'- cauaGCaGCaGUAGCGGCAGCGG-------AGG- -5'
15845 5' -54.3 NC_004065.1 + 81150 0.67 0.972559
Target:  5'- --uUCGUCccccUCGcccccCGCCGcCGCCUCCu -3'
miRNA:   3'- cauAGCAGc---AGUa----GCGGCaGCGGAGG- -5'
15845 5' -54.3 NC_004065.1 + 109912 0.67 0.972559
Target:  5'- cGgcUCGUCcgccgCGgcCGCCGUCGCgUCCc -3'
miRNA:   3'- -CauAGCAGca---GUa-GCGGCAGCGgAGG- -5'
15845 5' -54.3 NC_004065.1 + 28995 0.67 0.972559
Target:  5'- -cAUUGUUGUCGUCGUUuUCGgaaCCUCCc -3'
miRNA:   3'- caUAGCAGCAGUAGCGGcAGC---GGAGG- -5'
15845 5' -54.3 NC_004065.1 + 113645 0.67 0.974379
Target:  5'- -cGUCGUCGaguaucUCAgCGCCGgguuccccgcccucUCGCuCUCCa -3'
miRNA:   3'- caUAGCAGC------AGUaGCGGC--------------AGCG-GAGG- -5'
15845 5' -54.3 NC_004065.1 + 161792 0.67 0.972559
Target:  5'- -cGUCcUCGUCAcCGCCGaCGCgCUCa -3'
miRNA:   3'- caUAGcAGCAGUaGCGGCaGCG-GAGg -5'
15845 5' -54.3 NC_004065.1 + 103083 0.67 0.97611
Target:  5'- ---gCGUCGUgaagaugaucuuggcCAUCGCCaUCccgGCCUCCa -3'
miRNA:   3'- cauaGCAGCA---------------GUAGCGGcAG---CGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.